JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DOCK5_chr8_25179689_25420711	0/0	t0052	4646	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0053	4647	1	0	1	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0054	4648	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0055	4639	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0056	4645	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0057	4648	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0058	4645	1	0	1	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0059	4649	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0060	4648	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0061	4649	1	0	0	1	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0062	4649	1	0	0	1	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0063	4650	1	0	0	1	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0064	4643	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0065	4644	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0066	4645	1	0	1	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0067	4646	1	0	1	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0068	4643	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0069	4635	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0070	4644	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0071	4645	1	0	0	1	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0072	4645	1	0	1	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0073	4645	1	0	0	1	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0074	4645	1	0	0	1	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0075	4646	1	0	1	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0076	4647	1	0	0	0	0	1	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0077	4647	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0078	4647	1	0	1	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0079	4646	1	0	0	0	0	1	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0080	4638	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0081	4639	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0082	4635	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0083	4644	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0084	4645	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0085	4647	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK6_chr19_11194295_11267524	1/1	t0001	287	308	92	57	114	13	30	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	t0002	287	3	2	1	0	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	t0003	287	2	0	0	0	1	1	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	t0004	287	1	0	0	0	0	1	copy fasta	DOCK6	chr19	11194295	11267524
DOCK7_chr1_62449726_62693386	1/1	t0001	811	140	47	24	45	6	16	copy fasta	DOCK7	chr1	62449726	62693386
DOCK7_chr1_62449726_62693386	0/0	t0002	811	75	17	14	29	6	9	copy fasta	DOCK7	chr1	62449726	62693386
DOCK7_chr1_62449726_62693386	0/0	t0003	811	6	0	0	6	0	0	copy fasta	DOCK7	chr1	62449726	62693386
DOCK7_chr1_62449726_62693386	0/0	t0004	811	2	1	1	0	0	0	copy fasta	DOCK7	chr1	62449726	62693386
DOCK7_chr1_62449726_62693386	0/0	t0005	811	2	2	0	0	0	0	copy fasta	DOCK7	chr1	62449726	62693386
DOCK7_chr1_62449726_62693386	0/0	t0006	811	1	1	0	0	0	0	copy fasta	DOCK7	chr1	62449726	62693386
DOCK7_chr1_62449726_62693386	0/0	t0007	811	1	0	1	0	0	0	copy fasta	DOCK7	chr1	62449726	62693386
DOCK7_chr1_62449726_62693386	0/0	t0008	811	1	0	0	0	0	1	copy fasta	DOCK7	chr1	62449726	62693386
DOCK8_chr9_209865_470255	0/1	t0001	1149	172	48	41	63	6	13	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	1/0	t0002	1149	27	9	7	1	0	9	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	t0003	1149	18	10	4	0	1	3	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	t0004	1149	11	6	1	1	1	2	copy fasta	DOCK8	chr9	209865	470255