JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DOCK8_chr9_209865_470255	0/0	t0005	1149	7	0	2	5	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	t0006	1149	5	1	1	0	0	3	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	t0007	1149	2	1	0	1	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	t0008	1149	2	2	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	t0009	1149	2	0	2	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	t0010	1149	2	2	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	t0011	1149	1	1	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	t0012	1149	1	1	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	t0013	1149	1	1	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	t0014	1149	1	1	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	t0015	1149	1	1	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	t0016	1149	1	0	0	1	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	t0017	1149	1	1	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	t0018	1037	1	1	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK9_chr13_98788429_98983064	1/1	t0001	1353	169	60	41	47	7	12	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	t0002	1353	90	21	5	51	1	12	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	t0003	1353	52	1	4	37	4	6	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	t0004	1348	18	0	2	13	0	3	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	t0005	1353	5	0	3	0	1	1	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	t0006	1353	3	0	0	2	0	1	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	t0007	1353	2	0	0	0	0	2	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	t0008	1353	2	2	0	0	0	0	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	t0009	1353	2	2	0	0	0	0	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	t0010	1353	1	0	1	0	0	0	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	t0011	1353	1	1	0	0	0	0	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	t0012	1353	1	0	0	0	0	1	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	t0013	1353	1	1	0	0	0	0	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	t0014	1348	1	0	0	0	1	0	copy fasta	DOCK9	chr13	98788429	98983064
DOHH_chr19_3485824_3505674	0/0	t0001	855	140	8	32	84	2	14	copy fasta	DOHH	chr19	3485824	3505674
DOHH_chr19_3485824_3505674	1/1	t0002	855	110	19	28	31	10	20	copy fasta	DOHH	chr19	3485824	3505674
DOHH_chr19_3485824_3505674	0/0	t0003	855	43	22	3	12	0	6	copy fasta	DOHH	chr19	3485824	3505674
DOHH_chr19_3485824_3505674	0/0	t0004	855	42	0	7	34	0	1	copy fasta	DOHH	chr19	3485824	3505674
DOHH_chr19_3485824_3505674	0/0	t0005	855	27	25	2	0	0	0	copy fasta	DOHH	chr19	3485824	3505674
DOHH_chr19_3485824_3505674	0/0	t0006	855	7	6	1	0	0	0	copy fasta	DOHH	chr19	3485824	3505674
DOHH_chr19_3485824_3505674	0/0	t0007	855	7	7	0	0	0	0	copy fasta	DOHH	chr19	3485824	3505674
DOHH_chr19_3485824_3505674	0/0	t0008	832	3	1	1	0	0	1	copy fasta	DOHH	chr19	3485824	3505674
DOHH_chr19_3485824_3505674	0/0	t0009	855	2	2	0	0	0	0	copy fasta	DOHH	chr19	3485824	3505674
DOHH_chr19_3485824_3505674	0/0	t0010	855	2	2	0	0	0	0	copy fasta	DOHH	chr19	3485824	3505674
DOHH_chr19_3485824_3505674	0/0	t0011	855	2	0	1	1	0	0	copy fasta	DOHH	chr19	3485824	3505674
DOHH_chr19_3485824_3505674	0/0	t0012	855	1	1	0	0	0	0	copy fasta	DOHH	chr19	3485824	3505674
DOHH_chr19_3485824_3505674	0/0	t0013	855	1	1	0	0	0	0	copy fasta	DOHH	chr19	3485824	3505674
DOHH_chr19_3485824_3505674	0/0	t0014	855	1	0	0	0	0	1	copy fasta	DOHH	chr19	3485824	3505674
DOHH_chr19_3485824_3505674	0/0	t0015	855	1	1	0	0	0	0	copy fasta	DOHH	chr19	3485824	3505674
DOHH_chr19_3485824_3505674	0/0	t0016	855	1	1	0	0	0	0	copy fasta	DOHH	chr19	3485824	3505674
DOHH_chr19_3485824_3505674	0/0	t0017	855	1	0	0	0	0	1	copy fasta	DOHH	chr19	3485824	3505674
DOHH_chr19_3485824_3505674	0/0	t0018	878	1	0	1	0	0	0	copy fasta	DOHH	chr19	3485824	3505674
DOK1_chr2_74549720_74562551	1/1	t0001	473	324	89	58	149	4	22	copy fasta	DOK1	chr2	74549720	74562551
DOK1_chr2_74549720_74562551	0/0	t0002	473	5	4	1	0	0	0	copy fasta	DOK1	chr2	74549720	74562551
DOK1_chr2_74549720_74562551	0/0	t0003	473	2	0	0	0	0	2	copy fasta	DOK1	chr2	74549720	74562551
DOK1_chr2_74549720_74562551	0/0	t0004	485	1	0	0	1	0	0	copy fasta	DOK1	chr2	74549720	74562551