JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DOK1_chr2_74549720_74562551	0/0	t0005	473	1	1	0	0	0	0	copy fasta	DOK1	chr2	74549720	74562551
DOK1_chr2_74549720_74562551	0/0	t0006	473	1	0	1	0	0	0	copy fasta	DOK1	chr2	74549720	74562551
DOK2_chr8_21903873_21918690	1/1	t0001	528	441	92	80	205	16	46	copy fasta	DOK2	chr8	21903873	21918690
DOK2_chr8_21903873_21918690	0/0	t0002	528	1	0	0	1	0	0	copy fasta	DOK2	chr8	21903873	21918690
DOK3_chr5_177496904_177514826	0/0	t0001	2266	114	8	40	47	9	10	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/1	t0002	2263	83	22	11	26	7	16	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0003	2263	64	0	8	53	0	3	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0004	2263	43	1	4	31	1	6	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0005	2263	13	2	0	11	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0006	2266	9	0	0	9	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0007	2263	7	6	1	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0008	2266	6	6	0	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0009	2263	5	0	0	5	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0010	2263	5	0	5	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0011	2266	4	3	1	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0012	2263	4	4	0	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0013	2266	4	4	0	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0014	2266	4	4	0	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0015	2266	4	3	1	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0016	2266	4	0	0	3	0	1	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0017	2266	3	3	0	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0018	2266	3	3	0	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0019	2266	3	3	0	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0020	2263	3	3	0	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0021	2263	3	0	3	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0022	2263	3	3	0	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0023	2266	2	2	0	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0024	2263	2	0	0	2	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0025	2266	2	2	0	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0026	2263	2	1	0	1	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0027	2266	2	0	0	2	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0028	2266	2	0	0	2	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0029	2266	2	2	0	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0030	2263	1	0	0	0	0	1	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0031	2266	1	1	0	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0032	2266	1	0	0	1	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0033	2266	1	0	1	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0034	2266	1	1	0	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0035	2266	1	1	0	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0036	2267	1	1	0	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0037	2266	1	1	0	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0038	2266	1	1	0	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0039	2266	1	1	0	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0040	2263	1	0	0	0	1	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0041	2264	1	0	0	1	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0042	2266	1	1	0	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0043	2263	1	0	0	1	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	1/0	t0044	2266	1	0	0	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0045	2266	1	0	0	1	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0046	2266	1	0	1	0	0	0	copy fasta	DOK3	chr5	177496904	177514826