JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DOK3_chr5_177496904_177514826	0/0	t0047	2263	1	0	0	1	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0048	2263	1	1	0	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0049	2266	1	0	0	0	0	1	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0050	2267	1	0	0	1	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0051	2267	1	0	0	1	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0052	2266	1	0	0	1	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0053	2263	1	0	1	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0054	2264	1	0	0	1	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0055	2263	1	0	0	1	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0056	2263	1	0	0	0	0	1	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0057	2266	1	1	0	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0058	2263	1	0	1	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0059	2263	1	0	0	0	0	1	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	t0060	2266	1	1	0	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK4_chr16_57466922_57491493	0/0	t0001	1826	157	43	35	51	5	23	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	1/1	t0002	1826	123	4	20	81	5	11	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	t0003	1826	24	21	1	0	0	2	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	t0004	1838	23	0	3	20	0	0	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	t0005	1826	22	0	0	18	0	4	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	t0006	1826	9	9	0	0	0	0	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	t0007	1826	7	0	2	0	1	4	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	t0008	1826	5	3	1	0	1	0	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	t0009	1826	4	4	0	0	0	0	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	t0010	1838	4	0	1	3	0	0	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	t0011	1831	3	3	0	0	0	0	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	t0012	1825	3	0	0	3	0	0	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	t0013	1826	3	0	0	2	1	0	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	t0014	1826	3	1	0	2	0	0	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	t0015	1826	2	2	0	0	0	0	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	t0016	1826	2	1	1	0	0	0	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	t0017	1831	2	2	0	0	0	0	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	t0018	1826	1	0	0	1	0	0	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	t0019	1838	1	0	0	1	0	0	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	t0020	1826	1	0	0	0	0	1	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	t0021	1826	1	1	0	0	0	0	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	t0022	1826	1	1	0	0	0	0	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	t0023	1826	1	0	0	1	0	0	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	t0024	1826	1	1	0	0	0	0	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	t0025	1826	1	0	1	0	0	0	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	t0026	1826	1	0	0	0	1	0	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	t0027	1826	1	0	0	1	0	0	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	t0028	1826	1	0	0	1	0	0	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	t0029	1826	1	0	1	0	0	0	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	t0030	1826	1	0	0	1	0	0	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	t0031	1826	1	0	0	0	0	1	copy fasta	DOK4	chr16	57466922	57491493
DOK5_chr20_54470593_54656169	0/0	t0001	1048	16	15	1	0	0	0	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/0	t0002	1048	15	11	4	0	0	0	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	1/0	t0003	1045	11	3	4	2	0	1	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/0	t0004	1048	7	5	2	0	0	0	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/0	t0005	1045	6	0	6	0	0	0	copy fasta	DOK5	chr20	54470593	54656169