JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DOK5_chr20_54470593_54656169	0/0	t0006	1049	6	0	6	0	0	0	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/0	t0007	1048	6	5	1	0	0	0	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/0	t0008	1045	5	0	4	0	0	1	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/0	t0009	1045	5	0	1	3	0	1	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/0	t0010	1045	5	5	0	0	0	0	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/1	t0011	1045	4	1	2	0	0	0	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/0	t0012	1049	4	4	0	0	0	0	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/0	t0013	1049	4	4	0	0	0	0	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/0	t0014	1048	4	4	0	0	0	0	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/0	t0015	1049	3	3	0	0	0	0	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/0	t0016	1049	3	2	1	0	0	0	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/0	t0017	1049	3	3	0	0	0	0	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/0	t0018	1048	3	3	0	0	0	0	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/0	t0019	1045	2	2	0	0	0	0	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/0	t0020	1049	2	2	0	0	0	0	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/0	t0021	1049	2	2	0	0	0	0	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/0	t0022	1049	2	1	1	0	0	0	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/0	t0023	1048	2	0	1	0	0	1	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/0	t0024	1048	2	1	1	0	0	0	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/0	t0025	1045	1	0	0	1	0	0	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/0	t0026	1045	1	1	0	0	0	0	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/0	t0027	1045	1	1	0	0	0	0	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/0	t0028	1045	1	0	1	0	0	0	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/0	t0029	1048	1	1	0	0	0	0	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/0	t0030	1049	1	1	0	0	0	0	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/0	t0031	1049	1	1	0	0	0	0	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/0	t0032	1048	1	1	0	0	0	0	copy fasta	DOK5	chr20	54470593	54656169
DOK6_chr18_69395888_69854087	0/1	t0001	8064	19	1	6	7	1	3	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0002	8064	7	2	4	0	0	1	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0003	8059	6	2	3	0	0	1	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0004	8051	5	1	4	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0005	8059	5	1	0	1	0	3	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0006	8057	4	0	2	2	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0007	8062	4	0	2	2	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0008	8051	3	0	0	0	0	3	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0009	8056	3	0	0	2	0	1	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0010	8060	3	0	1	0	0	2	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0011	8066	3	0	0	1	0	2	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0012	8065	3	0	0	3	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0013	8057	2	0	1	0	1	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0014	8051	2	1	0	0	0	1	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0015	8056	2	1	1	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0016	8058	2	0	0	0	0	2	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0017	8070	2	2	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0018	8052	2	1	0	0	0	1	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0019	8055	2	0	0	2	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0020	8057	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0021	8062	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0022	8062	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0023	8062	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087