JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DOK6_chr18_69395888_69854087	0/0	t0024	8064	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0025	8062	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0026	8058	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0027	8058	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0028	8057	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0029	8057	1	0	0	1	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0030	8054	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0031	8052	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0032	8050	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0033	8068	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0034	8057	1	0	1	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0035	8058	1	0	1	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0036	8064	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0037	8051	1	0	0	0	0	1	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0038	8060	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0039	8052	1	0	0	0	0	1	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0040	8056	1	0	0	0	1	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0041	8053	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0042	8053	1	0	0	0	0	1	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0043	8059	1	0	1	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0044	8064	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0045	8069	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0046	8067	1	0	0	1	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0047	8060	1	0	0	1	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0048	8072	1	0	1	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0049	8066	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0050	8066	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0051	8066	1	0	0	1	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0052	8059	1	0	1	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0053	8075	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0054	8053	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	1/0	t0055	8062	1	0	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0056	8058	1	0	1	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0057	8056	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0058	8055	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0059	8066	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0060	8058	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0061	8052	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0062	8050	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0063	8060	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0064	8062	1	0	0	1	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0065	8067	1	0	1	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0066	8065	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0067	8072	1	0	0	1	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0068	8067	1	0	0	0	0	1	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0069	8060	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0070	8063	1	0	0	0	0	1	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0071	8069	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0072	8064	1	0	1	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0073	8066	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087