JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DOK6_chr18_69395888_69854087	0/0	t0074	8059	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0075	8070	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0076	8062	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0077	8060	1	0	0	0	0	1	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0078	8060	1	0	1	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0079	8068	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0080	8064	1	0	0	1	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0081	8060	1	0	0	1	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0082	8064	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0083	8064	1	0	0	0	1	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0084	8057	1	0	0	1	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0085	8063	1	0	0	1	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0086	8061	1	0	0	1	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0087	8061	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0088	8075	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0089	8067	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0090	8077	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0091	8065	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0092	8071	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0093	8074	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0094	8060	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0095	8058	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0096	8050	1	0	1	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0097	8053	1	0	0	1	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0098	8059	1	0	1	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0099	8065	1	0	0	0	0	1	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0100	8065	1	0	0	0	0	1	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0101	8068	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0102	8064	1	0	0	1	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0103	8064	1	0	1	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0104	8063	1	0	0	1	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0105	8071	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0106	8062	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0107	8058	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0108	8074	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0109	8064	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	t0110	8062	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK7_chr4_3458306_3499482	0/1	t0001	1052	98	4	7	74	3	9	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	1/0	t0002	1052	92	40	21	11	8	11	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0003	1051	74	7	17	42	1	7	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0004	1051	38	10	10	13	0	5	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0005	1052	17	5	9	0	1	2	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0006	1051	17	4	7	3	1	2	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0007	1051	15	0	3	3	2	7	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0008	1047	11	11	0	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0009	1052	4	0	0	4	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0010	1052	4	3	1	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0011	1051	3	3	0	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0012	1052	2	0	0	0	0	2	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0013	1052	2	2	0	0	0	0	copy fasta	DOK7	chr4	3458306	3499482