JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DOK7_chr4_3458306_3499482	0/0	t0014	1051	2	0	2	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0015	1051	1	1	0	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0016	1052	1	0	1	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0017	1052	1	0	0	0	0	1	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0018	1052	1	0	1	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0019	1051	1	0	0	0	0	1	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0020	1048	1	0	0	1	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0021	1052	1	1	0	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0022	1052	1	1	0	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0023	1051	1	0	1	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0024	1051	1	1	0	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0025	1051	1	1	0	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0026	1051	1	0	0	1	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0027	1052	1	0	0	1	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0028	1052	1	0	0	1	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0029	1051	1	0	1	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0030	1052	1	0	0	0	0	1	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0031	1052	1	0	1	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0032	1052	1	1	0	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0033	1047	1	1	0	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0034	1052	1	0	1	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0035	1051	1	0	0	0	0	1	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0036	1052	1	0	0	1	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0037	1051	1	0	0	1	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0038	1052	1	0	1	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	t0039	1051	1	0	0	0	0	1	copy fasta	DOK7	chr4	3458306	3499482
DOLK_chr9_128940530_128952603	1/1	t0001	458	342	74	70	142	14	40	copy fasta	DOLK	chr9	128940530	128952603
DOLK_chr9_128940530_128952603	0/0	t0002	458	7	7	0	0	0	0	copy fasta	DOLK	chr9	128940530	128952603
DOLK_chr9_128940530_128952603	0/0	t0003	458	2	2	0	0	0	0	copy fasta	DOLK	chr9	128940530	128952603
DOLK_chr9_128940530_128952603	0/0	t0004	458	1	1	0	0	0	0	copy fasta	DOLK	chr9	128940530	128952603
DOLPP1_chr9_129076111_129095438	1/1	t0001	1453	386	96	60	170	14	44	copy fasta	DOLPP1	chr9	129076111	129095438
DOLPP1_chr9_129076111_129095438	0/0	t0002	1453	22	0	9	10	0	3	copy fasta	DOLPP1	chr9	129076111	129095438
DOLPP1_chr9_129076111_129095438	0/0	t0003	1453	2	0	2	0	0	0	copy fasta	DOLPP1	chr9	129076111	129095438
DOLPP1_chr9_129076111_129095438	0/0	t0004	1453	1	0	0	1	0	0	copy fasta	DOLPP1	chr9	129076111	129095438
DOLPP1_chr9_129076111_129095438	0/0	t0005	1453	1	0	1	0	0	0	copy fasta	DOLPP1	chr9	129076111	129095438
DOLPP1_chr9_129076111_129095438	0/0	t0006	1453	1	0	0	1	0	0	copy fasta	DOLPP1	chr9	129076111	129095438
DOLPP1_chr9_129076111_129095438	0/0	t0007	1453	1	0	0	0	0	1	copy fasta	DOLPP1	chr9	129076111	129095438
DONSON_chr21_33572551_33593684	0/0	t0001	766	17	6	4	3	2	2	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0002	772	17	4	3	9	0	1	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0003	770	16	3	2	9	0	2	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0004	744	13	4	4	4	1	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0005	774	11	1	4	4	0	2	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	1/0	t0006	800	11	2	1	7	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0007	768	10	2	2	5	0	1	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0008	776	10	0	1	7	1	1	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0009	742	9	0	1	4	2	2	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0010	790	9	0	5	3	0	1	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0011	760	8	3	1	2	0	2	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0012	774	8	0	0	6	0	2	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0013	746	7	1	2	1	0	3	copy fasta	DONSON	chr21	33572551	33593684