JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DONSON_chr21_33572551_33593684	0/0	t0064	788	2	0	1	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0065	798	2	0	0	1	0	1	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0066	800	2	0	1	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0067	790	2	0	1	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0068	800	2	0	0	2	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0069	800	2	0	0	1	0	1	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0070	796	2	0	0	1	0	1	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0071	765	2	1	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0072	771	2	0	1	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0073	775	2	0	1	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0074	758	2	0	0	2	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0075	772	2	0	0	2	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0076	762	1	0	0	0	1	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0077	763	1	0	0	0	1	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0078	771	1	1	0	0	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0079	765	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0080	781	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0081	756	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0082	764	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0083	768	1	1	0	0	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0084	774	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0085	778	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0086	788	1	0	1	0	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0087	779	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0088	776	1	1	0	0	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0089	780	1	1	0	0	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0090	776	1	1	0	0	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0091	766	1	0	0	0	0	1	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0092	783	1	1	0	0	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0093	777	1	1	0	0	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0094	785	1	1	0	0	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0095	738	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0096	740	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0097	738	1	0	1	0	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0098	742	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0099	748	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0100	758	1	1	0	0	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0101	772	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0102	766	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0103	761	1	1	0	0	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0104	772	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0105	776	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0106	772	1	1	0	0	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0107	782	1	0	0	0	0	1	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0108	778	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0109	784	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0110	792	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0111	784	1	1	0	0	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0112	794	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0113	796	1	0	0	0	0	1	copy fasta	DONSON	chr21	33572551	33593684