JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DONSON_chr21_33572551_33593684	0/0	t0114	792	1	0	1	0	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0115	800	1	0	1	0	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0116	796	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0117	798	1	0	1	0	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0118	747	1	0	1	0	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0119	771	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0120	759	1	0	0	0	0	1	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0121	775	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0122	763	1	0	0	0	0	1	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0123	773	1	1	0	0	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0124	777	1	1	0	0	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0125	789	1	0	0	0	0	1	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0126	779	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0127	787	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0128	783	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0129	764	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0130	764	1	1	0	0	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0131	770	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0132	766	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0133	774	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0134	782	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0135	778	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0136	790	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0137	773	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0138	768	1	0	0	1	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0139	746	1	0	0	0	0	1	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0140	774	1	1	0	0	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0141	766	1	1	0	0	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	t0142	758	1	1	0	0	0	0	copy fasta	DONSON	chr21	33572551	33593684
DOP1A_chr6_83062671_83173471	1/1	t0001	560	228	61	33	98	7	27	copy fasta	DOP1A	chr6	83062671	83173471
DOP1A_chr6_83062671_83173471	0/0	t0002	560	57	0	11	38	3	5	copy fasta	DOP1A	chr6	83062671	83173471
DOP1A_chr6_83062671_83173471	0/0	t0003	560	9	9	0	0	0	0	copy fasta	DOP1A	chr6	83062671	83173471
DOP1A_chr6_83062671_83173471	0/0	t0004	560	4	4	0	0	0	0	copy fasta	DOP1A	chr6	83062671	83173471
DOP1B_chr21_36151824_36299274	0/1	t0001	850	211	69	42	60	10	29	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	1/0	t0002	850	61	18	15	19	2	6	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	t0003	850	14	0	9	1	2	2	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	t0004	850	2	1	1	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	t0005	850	1	0	0	1	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	t0006	850	1	0	0	1	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	t0007	850	1	0	1	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	t0008	850	1	0	0	0	0	1	copy fasta	DOP1B	chr21	36151824	36299274
DOT1L_chr19_2158933_2237578	1/1	t0001	3039	193	44	39	73	13	22	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0002	3039	59	7	9	35	0	8	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0003	3039	45	12	7	24	0	2	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0004	3039	22	0	3	14	3	2	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0005	3037	5	0	1	0	2	2	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0006	3039	4	3	1	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0007	3039	3	0	2	1	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0008	3039	3	3	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0009	3039	3	3	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578