JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DOT1L_chr19_2158933_2237578	0/0	t0010	3039	3	1	2	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0011	3039	3	3	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0012	3039	2	0	0	2	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0013	3039	2	2	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0014	3039	2	0	0	0	0	2	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0015	3039	2	2	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0016	3039	2	0	0	0	0	2	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0017	3039	1	0	0	1	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0018	3039	1	0	0	1	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0019	3039	1	1	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0020	3039	1	0	1	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0021	3039	1	1	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0022	3039	1	1	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0023	3039	1	0	0	0	0	1	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0024	3039	1	1	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0025	3039	1	1	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0026	3039	1	0	1	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0027	3039	1	0	1	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0028	3039	1	1	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0029	3039	1	1	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0030	3039	1	1	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0031	3039	1	0	1	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0032	3039	1	1	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0033	3039	1	1	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0034	3039	1	1	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0035	3039	1	0	0	1	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0036	3039	1	0	0	0	0	1	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0037	3039	1	0	1	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0038	3039	1	1	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0039	3039	1	0	1	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0040	3039	1	0	0	1	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	t0041	3039	1	0	0	1	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DPAGT1_chr11_119091510_119106853	1/1	t0001	687	208	56	46	73	10	21	copy fasta	DPAGT1	chr11	119091510	119106853
DPAGT1_chr11_119091510_119106853	0/0	t0002	687	140	12	20	93	5	10	copy fasta	DPAGT1	chr11	119091510	119106853
DPAGT1_chr11_119091510_119106853	0/0	t0003	687	68	16	5	29	1	17	copy fasta	DPAGT1	chr11	119091510	119106853
DPAGT1_chr11_119091510_119106853	0/0	t0004	687	4	4	0	0	0	0	copy fasta	DPAGT1	chr11	119091510	119106853
DPAGT1_chr11_119091510_119106853	0/0	t0005	687	1	0	1	0	0	0	copy fasta	DPAGT1	chr11	119091510	119106853
DPAGT1_chr11_119091510_119106853	0/0	t0006	687	1	0	0	1	0	0	copy fasta	DPAGT1	chr11	119091510	119106853
DPCD_chr10_101583321_101614662	1/1	t0001	208	342	82	60	136	16	46	copy fasta	DPCD	chr10	101583321	101614662
DPEP1_chr16_89608642_89643433	1/1	t0001	396	223	63	53	68	11	26	copy fasta	DPEP1	chr16	89608642	89643433
DPEP1_chr16_89608642_89643433	0/0	t0002	396	13	11	2	0	0	0	copy fasta	DPEP1	chr16	89608642	89643433
DPEP1_chr16_89608642_89643433	0/0	t0003	396	12	0	2	7	1	2	copy fasta	DPEP1	chr16	89608642	89643433
DPEP1_chr16_89608642_89643433	0/0	t0004	396	1	0	0	1	0	0	copy fasta	DPEP1	chr16	89608642	89643433
DPEP1_chr16_89608642_89643433	0/0	t0005	369	1	0	1	0	0	0	copy fasta	DPEP1	chr16	89608642	89643433
DPEP2NB_chr16_68008436_68020911	1/1	t0001	814	307	85	57	116	15	32	copy fasta	DPEP2NB	chr16	68008436	68020911
DPEP2NB_chr16_68008436_68020911	0/0	t0002	814	48	6	12	21	1	8	copy fasta	DPEP2NB	chr16	68008436	68020911
DPEP2NB_chr16_68008436_68020911	0/0	t0003	814	2	0	2	0	0	0	copy fasta	DPEP2NB	chr16	68008436	68020911
DPEP2NB_chr16_68008436_68020911	0/0	t0004	814	1	0	0	1	0	0	copy fasta	DPEP2NB	chr16	68008436	68020911
DPEP2NB_chr16_68008436_68020911	0/0	t0005	814	1	0	0	1	0	0	copy fasta	DPEP2NB	chr16	68008436	68020911
DPEP2NB_chr16_68008436_68020911	0/0	t0006	804	1	0	0	1	0	0	copy fasta	DPEP2NB	chr16	68008436	68020911