JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DPEP2NB_chr16_68008436_68020911	0/0	t0007	814	1	1	0	0	0	0	copy fasta	DPEP2NB	chr16	68008436	68020911
DPEP2NB_chr16_68008436_68020911	0/0	t0008	814	1	0	1	0	0	0	copy fasta	DPEP2NB	chr16	68008436	68020911
DPEP2_chr16_67982394_68004484	1/1	t0001	268	349	85	72	138	16	36	copy fasta	DPEP2	chr16	67982394	68004484
DPEP2_chr16_67982394_68004484	0/0	t0002	268	7	7	0	0	0	0	copy fasta	DPEP2	chr16	67982394	68004484
DPEP3_chr16_67970663_67985499	1/1	t0001	222	331	94	72	109	18	36	copy fasta	DPEP3	chr16	67970663	67985499
DPEP3_chr16_67970663_67985499	0/0	t0002	222	1	0	0	1	0	0	copy fasta	DPEP3	chr16	67970663	67985499
DPF1_chr19_38206006_38229222	1/1	t0001	1138	410	85	83	180	15	45	copy fasta	DPF1	chr19	38206006	38229222
DPF1_chr19_38206006_38229222	0/0	t0002	1137	13	3	1	7	1	1	copy fasta	DPF1	chr19	38206006	38229222
DPF1_chr19_38206006_38229222	0/0	t0003	1138	9	7	2	0	0	0	copy fasta	DPF1	chr19	38206006	38229222
DPF1_chr19_38206006_38229222	0/0	t0004	1138	1	0	0	1	0	0	copy fasta	DPF1	chr19	38206006	38229222
DPF1_chr19_38206006_38229222	0/0	t0005	1138	1	1	0	0	0	0	copy fasta	DPF1	chr19	38206006	38229222
DPF2_chr11_65328852_65359262	0/0	t0001	2539	151	50	20	65	6	10	copy fasta	DPF2	chr11	65328852	65359262
DPF2_chr11_65328852_65359262	0/0	t0002	2539	149	14	38	68	11	18	copy fasta	DPF2	chr11	65328852	65359262
DPF2_chr11_65328852_65359262	0/0	t0003	2539	21	16	2	0	1	2	copy fasta	DPF2	chr11	65328852	65359262
DPF2_chr11_65328852_65359262	0/0	t0004	2539	6	0	0	6	0	0	copy fasta	DPF2	chr11	65328852	65359262
DPF2_chr11_65328852_65359262	0/0	t0005	2539	5	0	2	0	0	3	copy fasta	DPF2	chr11	65328852	65359262
DPF2_chr11_65328852_65359262	0/0	t0006	2533	3	3	0	0	0	0	copy fasta	DPF2	chr11	65328852	65359262
DPF2_chr11_65328852_65359262	0/0	t0007	2539	2	0	0	2	0	0	copy fasta	DPF2	chr11	65328852	65359262
DPF2_chr11_65328852_65359262	0/0	t0008	2539	2	0	0	2	0	0	copy fasta	DPF2	chr11	65328852	65359262
DPF2_chr11_65328852_65359262	0/0	t0009	2539	2	2	0	0	0	0	copy fasta	DPF2	chr11	65328852	65359262
DPF2_chr11_65328852_65359262	0/0	t0010	2539	1	0	0	0	0	1	copy fasta	DPF2	chr11	65328852	65359262
DPF2_chr11_65328852_65359262	0/0	t0011	2539	1	0	0	1	0	0	copy fasta	DPF2	chr11	65328852	65359262
DPF2_chr11_65328852_65359262	0/0	t0012	2539	1	0	0	0	0	1	copy fasta	DPF2	chr11	65328852	65359262
DPF2_chr11_65328852_65359262	0/0	t0013	2539	1	0	0	1	0	0	copy fasta	DPF2	chr11	65328852	65359262
DPF2_chr11_65328852_65359262	0/0	t0014	2539	1	0	1	0	0	0	copy fasta	DPF2	chr11	65328852	65359262
DPF2_chr11_65328852_65359262	0/0	t0015	2539	1	1	0	0	0	0	copy fasta	DPF2	chr11	65328852	65359262
DPF2_chr11_65328852_65359262	0/0	t0016	2539	1	0	1	0	0	0	copy fasta	DPF2	chr11	65328852	65359262
DPF2_chr11_65328852_65359262	0/0	t0017	2539	1	0	0	1	0	0	copy fasta	DPF2	chr11	65328852	65359262
DPF2_chr11_65328852_65359262	0/0	t0018	2539	1	0	0	0	0	1	copy fasta	DPF2	chr11	65328852	65359262
DPF2_chr11_65328852_65359262	0/0	t0019	2539	1	1	0	0	0	0	copy fasta	DPF2	chr11	65328852	65359262
DPF2_chr11_65328852_65359262	0/0	t0020	2539	1	0	0	1	0	0	copy fasta	DPF2	chr11	65328852	65359262
DPF2_chr11_65328852_65359262	0/0	t0021	2539	1	0	0	1	0	0	copy fasta	DPF2	chr11	65328852	65359262
DPF2_chr11_65328852_65359262	0/0	t0022	2539	1	1	0	0	0	0	copy fasta	DPF2	chr11	65328852	65359262
DPF3_chr14_72604034_72899101	0/0	t0001	10288	25	2	4	15	2	2	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/1	t0002	10283	16	1	7	1	1	5	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0003	10288	9	0	4	4	0	1	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0004	10286	8	8	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0005	10296	7	2	0	2	0	3	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0006	10288	6	1	0	0	0	5	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0007	10295	6	0	2	4	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0008	10289	5	4	1	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0009	10285	5	1	3	0	0	1	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0010	10293	5	4	1	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0011	10287	4	4	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0012	10286	4	2	1	0	1	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0013	10281	4	4	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0014	10302	4	0	0	4	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0015	10300	4	0	0	4	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0016	10298	3	2	1	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0017	10298	3	0	1	2	0	0	copy fasta	DPF3	chr14	72604034	72899101