JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DPF3_chr14_72604034_72899101	0/0	t0018	10288	3	0	1	1	0	1	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0019	10296	3	3	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0020	10285	3	1	2	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0021	10283	3	2	0	0	1	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0022	10279	3	0	0	0	0	3	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0023	10292	3	3	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0024	10291	2	2	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0025	10298	2	0	0	0	0	2	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0026	10300	2	0	1	1	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0027	10288	2	0	0	2	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0028	10290	2	0	0	0	0	2	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0029	10287	2	2	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0030	10289	2	0	2	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0031	10287	2	2	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0032	10283	2	2	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	1/0	t0033	10277	2	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0034	10287	2	0	0	0	0	2	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0035	10294	2	1	1	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0036	10289	2	2	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0037	10294	2	2	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0038	10298	2	1	1	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0039	10296	2	2	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0040	10300	2	0	0	1	0	1	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0041	10288	1	0	0	1	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0042	10292	1	0	0	1	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0043	10298	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0044	10302	1	0	1	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0045	10294	1	0	1	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0046	10292	1	0	0	1	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0047	10288	1	0	0	1	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0048	10288	1	0	1	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0049	10287	1	0	0	1	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0050	10291	1	0	0	0	0	1	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0051	10288	1	0	0	1	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0052	10290	1	0	0	1	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0053	10288	1	0	0	0	0	1	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0054	10288	1	0	0	1	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0055	10289	1	0	0	1	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0056	10289	1	0	0	1	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0057	10289	1	0	0	1	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0058	10288	1	0	0	0	0	1	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0059	10292	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0060	10291	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0061	10274	1	0	0	0	0	1	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0062	10286	1	0	1	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0063	10290	1	0	0	0	0	1	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0064	10293	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0065	10288	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0066	10289	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0067	10288	1	0	1	0	0	0	copy fasta	DPF3	chr14	72604034	72899101