JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DPF3_chr14_72604034_72899101	0/0	t0068	10286	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0069	10286	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0070	10285	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0071	10296	1	0	1	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0072	10286	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0073	10286	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0074	10293	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0075	10293	1	0	0	0	0	1	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0076	10289	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0077	10283	1	0	1	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0078	10277	1	0	1	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0079	10298	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0080	10297	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0081	10287	1	0	0	1	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0082	10287	1	0	1	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0083	10286	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0084	10296	1	0	0	1	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0085	10288	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0086	10293	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0087	10294	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0088	10296	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0089	10303	1	0	0	1	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0090	10299	1	0	0	1	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0091	10299	1	0	0	1	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0092	10297	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0093	10296	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0094	10316	1	0	0	1	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0095	10308	1	0	0	1	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0096	10306	1	0	0	1	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0097	10298	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0098	10298	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0099	10296	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0100	10305	1	0	0	1	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0101	10296	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0102	10303	1	0	0	0	1	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0103	10300	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	t0104	10288	1	0	0	1	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPH1_chr17_2025153_2048898	1/1	t0001	1330	345	82	60	152	11	38	copy fasta	DPH1	chr17	2025153	2048898
DPH1_chr17_2025153_2048898	0/0	t0002	1330	30	1	11	10	3	5	copy fasta	DPH1	chr17	2025153	2048898
DPH1_chr17_2025153_2048898	0/0	t0003	1330	3	0	0	0	0	3	copy fasta	DPH1	chr17	2025153	2048898
DPH1_chr17_2025153_2048898	0/0	t0004	1330	3	3	0	0	0	0	copy fasta	DPH1	chr17	2025153	2048898
DPH1_chr17_2025153_2048898	0/0	t0005	1331	2	0	0	1	0	1	copy fasta	DPH1	chr17	2025153	2048898
DPH1_chr17_2025153_2048898	0/0	t0006	1330	2	2	0	0	0	0	copy fasta	DPH1	chr17	2025153	2048898
DPH1_chr17_2025153_2048898	0/0	t0007	1331	1	0	0	1	0	0	copy fasta	DPH1	chr17	2025153	2048898
DPH1_chr17_2025153_2048898	0/0	t0008	1330	1	0	0	0	0	1	copy fasta	DPH1	chr17	2025153	2048898
DPH1_chr17_2025153_2048898	0/0	t0009	1330	1	0	0	1	0	0	copy fasta	DPH1	chr17	2025153	2048898
DPH1_chr17_2025153_2048898	0/0	t0010	1330	1	0	0	1	0	0	copy fasta	DPH1	chr17	2025153	2048898
DPH1_chr17_2025153_2048898	0/0	t0011	1330	1	1	0	0	0	0	copy fasta	DPH1	chr17	2025153	2048898
DPH1_chr17_2025153_2048898	0/0	t0012	1330	1	0	1	0	0	0	copy fasta	DPH1	chr17	2025153	2048898
DPH1_chr17_2025153_2048898	0/0	t0013	1330	1	1	0	0	0	0	copy fasta	DPH1	chr17	2025153	2048898