JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DPH2_chr1_43965010_43978369	0/1	t0001	997	143	5	40	72	8	17	copy fasta	DPH2	chr1	43965010	43978369
DPH2_chr1_43965010_43978369	0/0	t0002	997	101	16	19	55	0	11	copy fasta	DPH2	chr1	43965010	43978369
DPH2_chr1_43965010_43978369	1/0	t0003	997	99	27	7	54	4	6	copy fasta	DPH2	chr1	43965010	43978369
DPH2_chr1_43965010_43978369	0/0	t0004	997	25	24	1	0	0	0	copy fasta	DPH2	chr1	43965010	43978369
DPH2_chr1_43965010_43978369	0/0	t0005	997	7	6	1	0	0	0	copy fasta	DPH2	chr1	43965010	43978369
DPH2_chr1_43965010_43978369	0/0	t0006	997	6	6	0	0	0	0	copy fasta	DPH2	chr1	43965010	43978369
DPH2_chr1_43965010_43978369	0/0	t0007	997	2	0	0	0	0	2	copy fasta	DPH2	chr1	43965010	43978369
DPH2_chr1_43965010_43978369	0/0	t0008	997	1	0	0	1	0	0	copy fasta	DPH2	chr1	43965010	43978369
DPH3_chr3_16252061_16269943	0/0	t0001	3769	193	26	41	97	2	27	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/1	t0002	3771	117	8	24	67	4	13	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/0	t0003	3771	30	1	1	25	0	3	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/0	t0004	3771	28	17	7	1	2	1	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/0	t0005	3771	19	18	1	0	0	0	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/0	t0006	3767	18	1	5	10	1	1	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/0	t0007	3771	4	4	0	0	0	0	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/0	t0008	3769	4	4	0	0	0	0	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/0	t0009	3769	4	0	0	4	0	0	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/0	t0010	3771	4	3	1	0	0	0	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/0	t0011	3766	4	0	2	0	1	1	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/0	t0012	3771	4	0	0	4	0	0	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/0	t0013	3771	3	3	0	0	0	0	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/0	t0014	3771	2	0	0	2	0	0	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/0	t0015	3769	2	0	0	2	0	0	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/0	t0016	3771	2	2	0	0	0	0	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/0	t0017	3771	2	2	0	0	0	0	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/0	t0018	3771	1	0	0	1	0	0	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	1/0	t0019	3771	1	0	0	0	0	0	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/0	t0020	3771	1	0	0	1	0	0	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/0	t0021	3769	1	1	0	0	0	0	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/0	t0022	3769	1	1	0	0	0	0	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/0	t0023	3769	1	0	1	0	0	0	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/0	t0024	3769	1	0	0	1	0	0	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/0	t0025	3769	1	0	0	1	0	0	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/0	t0026	3769	1	0	0	1	0	0	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/0	t0027	3769	1	0	1	0	0	0	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/0	t0028	3769	1	1	0	0	0	0	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/0	t0029	3771	1	1	0	0	0	0	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/0	t0030	3766	1	1	0	0	0	0	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/0	t0031	3771	1	1	0	0	0	0	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/0	t0032	3771	1	1	0	0	0	0	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/0	t0033	3771	1	0	0	1	0	0	copy fasta	DPH3	chr3	16252061	16269943
DPH5_chr1_100984623_101030784	1/1	t0001	911	266	82	41	96	13	32	copy fasta	DPH5	chr1	100984623	101030784
DPH5_chr1_100984623_101030784	0/0	t0002	911	8	1	3	0	0	4	copy fasta	DPH5	chr1	100984623	101030784
DPH5_chr1_100984623_101030784	0/0	t0003	911	6	0	0	5	1	0	copy fasta	DPH5	chr1	100984623	101030784
DPH5_chr1_100984623_101030784	0/0	t0004	911	1	1	0	0	0	0	copy fasta	DPH5	chr1	100984623	101030784
DPH5_chr1_100984623_101030784	0/0	t0005	911	1	0	0	1	0	0	copy fasta	DPH5	chr1	100984623	101030784
DPH6_chr15_35365880_35551165	1/1	t0001	1295	154	52	26	56	6	12	copy fasta	DPH6	chr15	35365880	35551165
DPH6_chr15_35365880_35551165	0/0	t0002	1295	66	27	7	26	2	4	copy fasta	DPH6	chr15	35365880	35551165
DPH6_chr15_35365880_35551165	0/0	t0003	1295	3	3	0	0	0	0	copy fasta	DPH6	chr15	35365880	35551165
DPH6_chr15_35365880_35551165	0/0	t0004	1295	2	2	0	0	0	0	copy fasta	DPH6	chr15	35365880	35551165