JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DPH6_chr15_35365880_35551165	0/0	t0005	1295	2	2	0	0	0	0	copy fasta	DPH6	chr15	35365880	35551165
DPH6_chr15_35365880_35551165	0/0	t0006	1295	1	0	1	0	0	0	copy fasta	DPH6	chr15	35365880	35551165
DPH7_chr9_137549444_137583925	1/1	t0001	944	244	60	46	94	10	32	copy fasta	DPH7	chr9	137549444	137583925
DPH7_chr9_137549444_137583925	0/0	t0002	944	77	17	27	19	6	8	copy fasta	DPH7	chr9	137549444	137583925
DPH7_chr9_137549444_137583925	0/0	t0003	944	11	8	0	0	0	3	copy fasta	DPH7	chr9	137549444	137583925
DPH7_chr9_137549444_137583925	0/0	t0004	944	3	3	0	0	0	0	copy fasta	DPH7	chr9	137549444	137583925
DPH7_chr9_137549444_137583925	0/0	t0005	944	1	0	0	0	0	1	copy fasta	DPH7	chr9	137549444	137583925
DPH7_chr9_137549444_137583925	0/0	t0006	944	1	1	0	0	0	0	copy fasta	DPH7	chr9	137549444	137583925
DPH7_chr9_137549444_137583925	0/0	t0007	944	1	0	0	1	0	0	copy fasta	DPH7	chr9	137549444	137583925
DPH7_chr9_137549444_137583925	0/0	t0008	944	1	0	1	0	0	0	copy fasta	DPH7	chr9	137549444	137583925
DPH7_chr9_137549444_137583925	0/0	t0009	944	1	1	0	0	0	0	copy fasta	DPH7	chr9	137549444	137583925
DPM1_chr20_50929870_50963532	1/1	t0001	272	377	88	69	166	14	38	copy fasta	DPM1	chr20	50929870	50963532
DPM1_chr20_50929870_50963532	0/0	t0002	272	2	2	0	0	0	0	copy fasta	DPM1	chr20	50929870	50963532
DPM1_chr20_50929870_50963532	0/0	t0003	272	1	0	1	0	0	0	copy fasta	DPM1	chr20	50929870	50963532
DPM2_chr9_127930099_127942854	1/1	t0001	658	389	90	63	182	12	40	copy fasta	DPM2	chr9	127930099	127942854
DPM2_chr9_127930099_127942854	0/0	t0002	658	1	0	1	0	0	0	copy fasta	DPM2	chr9	127930099	127942854
DPM3_chr1_155134891_155145531	1/1	t0001	118	348	92	59	129	18	48	copy fasta	DPM3	chr1	155134891	155145531
DPM3_chr1_155134891_155145531	0/0	t0002	118	1	0	0	1	0	0	copy fasta	DPM3	chr1	155134891	155145531
DPM3_chr1_155134891_155145531	0/0	t0003	118	1	0	1	0	0	0	copy fasta	DPM3	chr1	155134891	155145531
DPP10_chr2_114437641_115850780	0/0	t0001	3574	20	13	2	3	0	2	copy fasta	DPP10	chr2	114437641	115850780
DPP10_chr2_114437641_115850780	0/0	t0002	3574	10	5	3	1	1	0	copy fasta	DPP10	chr2	114437641	115850780
DPP10_chr2_114437641_115850780	0/0	t0003	3574	8	7	1	0	0	0	copy fasta	DPP10	chr2	114437641	115850780
DPP10_chr2_114437641_115850780	0/0	t0004	3574	4	3	1	0	0	0	copy fasta	DPP10	chr2	114437641	115850780
DPP10_chr2_114437641_115850780	0/0	t0005	3574	2	0	0	0	0	2	copy fasta	DPP10	chr2	114437641	115850780
DPP10_chr2_114437641_115850780	0/0	t0006	3574	2	2	0	0	0	0	copy fasta	DPP10	chr2	114437641	115850780
DPP10_chr2_114437641_115850780	0/0	t0007	3574	1	1	0	0	0	0	copy fasta	DPP10	chr2	114437641	115850780
DPP10_chr2_114437641_115850780	0/0	t0008	3574	1	1	0	0	0	0	copy fasta	DPP10	chr2	114437641	115850780
DPP10_chr2_114437641_115850780	0/0	t0009	3574	1	0	0	0	1	0	copy fasta	DPP10	chr2	114437641	115850780
DPP10_chr2_114437641_115850780	0/0	t0010	3574	1	1	0	0	0	0	copy fasta	DPP10	chr2	114437641	115850780
DPP10_chr2_114437641_115850780	0/0	t0011	3574	1	0	1	0	0	0	copy fasta	DPP10	chr2	114437641	115850780
DPP10_chr2_114437641_115850780	0/0	t0012	3571	1	1	0	0	0	0	copy fasta	DPP10	chr2	114437641	115850780
DPP10_chr2_114437641_115850780	0/0	t0013	3571	1	1	0	0	0	0	copy fasta	DPP10	chr2	114437641	115850780
DPP10_chr2_114437641_115850780	0/0	t0014	3574	1	0	0	1	0	0	copy fasta	DPP10	chr2	114437641	115850780
DPP10_chr2_114437641_115850780	0/0	t0015	3574	1	0	0	1	0	0	copy fasta	DPP10	chr2	114437641	115850780
DPP10_chr2_114437641_115850780	0/0	t0016	3574	1	1	0	0	0	0	copy fasta	DPP10	chr2	114437641	115850780
DPP3_chr11_66475434_66514657	1/1	t0001	447	244	68	44	95	10	25	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	t0002	447	61	3	14	32	3	9	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	t0003	447	39	10	2	27	0	0	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	t0004	447	2	2	0	0	0	0	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	t0005	447	1	0	0	0	1	0	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	t0006	447	1	1	0	0	0	0	copy fasta	DPP3	chr11	66475434	66514657
DPP4_chr2_161987245_162079215	0/1	t0001	1273	147	55	23	35	8	25	copy fasta	DPP4	chr2	161987245	162079215
DPP4_chr2_161987245_162079215	1/0	t0002	1273	123	32	23	46	8	13	copy fasta	DPP4	chr2	161987245	162079215
DPP4_chr2_161987245_162079215	0/0	t0003	1273	13	0	0	13	0	0	copy fasta	DPP4	chr2	161987245	162079215
DPP4_chr2_161987245_162079215	0/0	t0004	1273	5	0	0	4	0	1	copy fasta	DPP4	chr2	161987245	162079215
DPP4_chr2_161987245_162079215	0/0	t0005	1273	1	1	0	0	0	0	copy fasta	DPP4	chr2	161987245	162079215
DPP4_chr2_161987245_162079215	0/0	t0006	1273	1	1	0	0	0	0	copy fasta	DPP4	chr2	161987245	162079215
DPP4_chr2_161987245_162079215	0/0	t0007	1273	1	1	0	0	0	0	copy fasta	DPP4	chr2	161987245	162079215
DPP4_chr2_161987245_162079215	0/0	t0008	1273	1	0	0	0	0	1	copy fasta	DPP4	chr2	161987245	162079215
DPP6_chr7_154047398_154899285	0/0	t0001	2230	4	0	1	2	0	1	copy fasta	DPP6	chr7	154047398	154899285