JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DPP6_chr7_154047398_154899285	0/0	t0002	2233	3	1	1	1	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	t0003	2228	2	0	0	2	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	t0004	2231	2	2	0	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	t0005	2226	2	0	1	1	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	t0006	2228	2	2	0	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	t0007	2226	1	1	0	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	t0008	2227	1	1	0	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	t0009	2218	1	1	0	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	t0010	2229	1	1	0	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	t0011	2229	1	1	0	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	t0012	2220	1	1	0	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	t0013	2229	1	0	0	1	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	t0014	2220	1	1	0	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	t0015	2223	1	0	1	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	t0016	2229	1	0	0	1	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	t0017	2225	1	1	0	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	t0018	2227	1	0	1	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	t0019	2226	1	0	0	0	0	1	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	t0020	2224	1	0	0	1	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	t0021	2249	1	0	1	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	t0022	2229	1	0	0	1	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	t0023	2219	1	1	0	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	t0024	2219	1	0	1	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	t0025	2216	1	1	0	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	t0026	2217	1	1	0	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	t0027	2226	1	0	1	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	t0028	2228	1	0	0	1	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	t0029	2233	1	0	0	1	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP7_chr9_137105546_137119733	1/1	t0001	123	452	97	86	199	18	50	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	t0002	123	1	0	0	1	0	0	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	t0003	123	1	1	0	0	0	0	copy fasta	DPP7	chr9	137105546	137119733
DPP8_chr15_65437467_65522689	0/0	t0001	4634	86	13	5	60	0	8	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	1/1	t0002	4633	86	5	20	38	6	15	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0003	4634	50	16	14	9	4	7	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0004	4637	17	5	5	6	0	1	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0005	4633	13	11	2	0	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0006	4634	7	1	5	0	1	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0007	4633	7	5	0	1	0	1	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0008	4633	7	0	3	0	1	3	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0009	4633	6	6	0	0	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0010	4634	4	0	1	0	0	3	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0011	4637	3	0	0	0	0	3	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0012	4634	3	3	0	0	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0013	4636	3	3	0	0	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0014	4634	2	2	0	0	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0015	4635	2	2	0	0	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0016	4635	2	2	0	0	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0017	4633	2	0	0	2	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0018	4634	2	2	0	0	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0019	4634	2	2	0	0	0	0	copy fasta	DPP8	chr15	65437467	65522689