JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DPP8_chr15_65437467_65522689	0/0	t0020	4633	2	0	0	1	1	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0021	4633	2	0	1	0	0	1	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0022	4633	2	0	1	0	1	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0023	4633	1	1	0	0	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0024	4634	1	0	0	0	0	1	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0025	4633	1	1	0	0	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0026	4636	1	1	0	0	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0027	4634	1	0	0	1	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0028	4635	1	1	0	0	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0029	4636	1	1	0	0	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0030	4634	1	0	0	1	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0031	4634	1	0	0	0	0	1	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0032	4634	1	0	0	1	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0033	4635	1	0	0	0	0	1	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0034	4634	1	0	1	0	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0035	4635	1	1	0	0	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0036	4634	1	1	0	0	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0037	4634	1	1	0	0	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0038	4633	1	0	1	0	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0039	4633	1	0	1	0	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0040	4634	1	1	0	0	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0041	4616	1	0	0	1	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0042	4633	1	0	0	1	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0043	4634	1	0	0	1	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0044	4635	1	0	0	0	0	1	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0045	4634	1	0	0	1	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0046	4633	1	1	0	0	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0047	4632	1	0	0	1	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	t0048	4615	1	0	0	1	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP9_chr19_4670227_4728842	1/1	t0001	1595	168	25	53	53	7	28	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	t0002	1595	64	42	7	10	3	2	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	t0003	1595	33	7	0	26	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	t0004	1596	26	2	13	0	3	8	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	t0005	1595	6	5	1	0	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	t0006	1595	3	3	0	0	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	t0007	1595	2	0	0	0	1	1	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	t0008	1595	1	1	0	0	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	t0009	1595	1	0	1	0	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	t0010	1595	1	1	0	0	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	t0011	1595	1	1	0	0	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	t0012	1595	1	0	0	1	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	t0013	1595	1	0	1	0	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	t0014	1595	1	1	0	0	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	t0015	1596	1	0	0	0	0	1	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	t0016	1596	1	0	0	0	0	1	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	t0017	1596	1	1	0	0	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	t0018	1595	1	0	0	0	0	1	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	t0019	1595	1	1	0	0	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPPA2_chr3_109288788_109321517	1/1	t0001	487	376	80	76	156	17	45	copy fasta	DPPA2	chr3	109288788	109321517
DPPA2_chr3_109288788_109321517	0/0	t0002	486	16	0	4	12	0	0	copy fasta	DPPA2	chr3	109288788	109321517