JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DPPA2_chr3_109288788_109321517	0/0	t0003	487	9	0	1	8	0	0	copy fasta	DPPA2	chr3	109288788	109321517
DPPA2_chr3_109288788_109321517	0/0	t0004	487	9	9	0	0	0	0	copy fasta	DPPA2	chr3	109288788	109321517
DPPA2_chr3_109288788_109321517	0/0	t0005	487	3	3	0	0	0	0	copy fasta	DPPA2	chr3	109288788	109321517
DPPA2_chr3_109288788_109321517	0/0	t0006	487	2	2	0	0	0	0	copy fasta	DPPA2	chr3	109288788	109321517
DPPA2_chr3_109288788_109321517	0/0	t0007	487	2	1	1	0	0	0	copy fasta	DPPA2	chr3	109288788	109321517
DPPA2_chr3_109288788_109321517	0/0	t0008	487	2	2	0	0	0	0	copy fasta	DPPA2	chr3	109288788	109321517
DPPA2_chr3_109288788_109321517	0/0	t0009	487	1	1	0	0	0	0	copy fasta	DPPA2	chr3	109288788	109321517
DPPA2_chr3_109288788_109321517	0/0	t0010	487	1	0	0	0	0	1	copy fasta	DPPA2	chr3	109288788	109321517
DPPA2_chr3_109288788_109321517	0/0	t0011	487	1	0	0	0	1	0	copy fasta	DPPA2	chr3	109288788	109321517
DPPA3_chr12_7706433_7722559	0/0	t0001	621	267	36	48	152	6	25	copy fasta	DPPA3	chr12	7706433	7722559
DPPA3_chr12_7706433_7722559	0/1	t0002	621	158	30	27	66	11	23	copy fasta	DPPA3	chr12	7706433	7722559
DPPA3_chr12_7706433_7722559	1/0	t0003	621	32	28	3	0	0	0	copy fasta	DPPA3	chr12	7706433	7722559
DPPA3_chr12_7706433_7722559	0/0	t0004	620	5	4	1	0	0	0	copy fasta	DPPA3	chr12	7706433	7722559
DPPA3_chr12_7706433_7722559	0/0	t0005	621	2	0	1	0	1	0	copy fasta	DPPA3	chr12	7706433	7722559
DPPA3_chr12_7706433_7722559	0/0	t0006	621	1	0	0	1	0	0	copy fasta	DPPA3	chr12	7706433	7722559
DPPA3_chr12_7706433_7722559	0/0	t0007	621	1	0	0	1	0	0	copy fasta	DPPA3	chr12	7706433	7722559
DPPA4_chr3_109321144_109342546	0/0	t0001	1874	181	6	27	117	9	22	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	t0002	1874	135	47	21	58	0	9	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	1/1	t0003	1874	32	8	17	0	3	2	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	t0004	1869	14	14	0	0	0	0	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	t0005	1874	13	2	5	1	2	3	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	t0006	1874	9	9	0	0	0	0	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	t0007	1874	7	0	7	0	0	0	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	t0008	1869	6	5	1	0	0	0	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	t0009	1874	2	2	0	0	0	0	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	t0010	1874	2	0	0	2	0	0	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	t0011	1874	2	0	0	2	0	0	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	t0012	1874	2	2	0	0	0	0	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	t0013	1874	2	2	0	0	0	0	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	t0014	1874	2	0	0	2	0	0	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	t0015	1874	1	0	0	1	0	0	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	t0016	1874	1	0	0	1	0	0	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	t0017	1875	1	0	0	1	0	0	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	t0018	1869	1	1	0	0	0	0	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	t0019	1874	1	0	0	1	0	0	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	t0020	1874	1	0	0	1	0	0	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	t0021	1874	1	0	0	1	0	0	copy fasta	DPPA4	chr3	109321144	109342546
DPPA5_chr6_73348063_73359276	1/1	t0001	309	418	89	79	194	16	38	copy fasta	DPPA5	chr6	73348063	73359276
DPPA5_chr6_73348063_73359276	0/0	t0002	309	10	9	1	0	0	0	copy fasta	DPPA5	chr6	73348063	73359276
DPRX_chr19_53626999_53642014	1/1	t0001	135	477	100	87	220	18	50	copy fasta	DPRX	chr19	53626999	53642014
DPRX_chr19_53626999_53642014	0/0	t0002	135	1	0	1	0	0	0	copy fasta	DPRX	chr19	53626999	53642014
DPT_chr1_168690468_168734206	1/0	t0001	1114	158	12	30	82	7	26	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	t0002	1115	152	12	32	90	6	12	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	t0003	1114	35	18	8	0	3	6	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/1	t0004	1115	34	8	7	11	2	5	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	t0005	1115	15	15	0	0	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	t0006	1115	6	6	0	0	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	t0007	1115	6	5	1	0	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	t0008	1114	5	5	0	0	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	t0009	1114	4	4	0	0	0	0	copy fasta	DPT	chr1	168690468	168734206