JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DPT_chr1_168690468_168734206	0/0	t0010	1115	3	3	0	0	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	t0011	1115	3	3	0	0	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	t0012	1114	3	0	0	3	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	t0013	1115	2	1	1	0	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	t0014	1115	2	2	0	0	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	t0015	1115	2	2	0	0	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	t0016	1114	2	2	0	0	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	t0017	1115	1	0	1	0	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	t0018	1115	1	0	1	0	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	t0019	1115	1	1	0	0	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	t0020	1115	1	0	0	0	0	1	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	t0021	1115	1	0	1	0	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	t0022	1115	1	1	0	0	0	0	copy fasta	DPT	chr1	168690468	168734206
DPY19L1_chr7_34923881_35042485	1/1	t0001	2784	157	33	28	80	1	13	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	t0002	2784	71	5	18	43	0	5	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	t0003	2784	52	11	12	21	1	7	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	t0004	2784	7	7	0	0	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	t0005	2784	6	0	0	4	0	2	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	t0006	2784	6	6	0	0	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	t0007	2784	5	5	0	0	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	t0008	2784	4	4	0	0	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	t0009	2784	4	4	0	0	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	t0010	2779	3	3	0	0	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	t0011	2784	2	0	0	2	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	t0012	2784	1	0	0	1	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	t0013	2784	1	0	1	0	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	t0014	2784	1	0	1	0	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	t0015	2784	1	1	0	0	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	t0016	2784	1	1	0	0	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	t0017	2784	1	1	0	0	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	t0018	2784	1	0	1	0	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	t0019	2784	1	1	0	0	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	t0020	2784	1	0	0	1	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	t0021	2784	1	0	0	0	0	1	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	t0022	2784	1	0	1	0	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L2_chr12_63553913_63673493	1/0	t0001	1700	192	28	32	105	3	23	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	t0002	1700	68	1	11	53	0	3	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	t0003	1700	59	42	12	0	3	2	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/1	t0004	1700	20	6	7	1	3	2	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	t0005	1700	8	0	2	0	3	3	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	t0006	1700	3	3	0	0	0	0	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	t0007	1700	2	2	0	0	0	0	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	t0008	1700	2	2	0	0	0	0	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	t0009	1700	1	0	1	0	0	0	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	t0010	1700	1	1	0	0	0	0	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	t0011	1700	1	0	0	1	0	0	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	t0012	1700	1	0	0	1	0	0	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	t0013	1700	1	0	0	0	0	1	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	t0014	1700	1	0	1	0	0	0	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	t0015	1700	1	1	0	0	0	0	copy fasta	DPY19L2	chr12	63553913	63673493