JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DPY19L2_chr12_63553913_63673493	0/0	t0016	1700	1	0	0	1	0	0	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L3_chr19_32400770_32490890	0/1	t0001	3828	82	10	17	33	7	14	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	t0002	3828	63	28	8	21	2	4	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	1/0	t0003	3828	52	2	9	32	3	5	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	t0004	3828	46	9	10	15	1	11	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	t0005	3829	31	0	0	30	0	1	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	t0006	3828	29	1	12	13	0	3	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	t0007	3830	24	0	0	24	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	t0008	3828	9	5	3	1	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	t0009	3830	6	6	0	0	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	t0010	3828	6	6	0	0	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	t0011	3828	5	5	0	0	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	t0012	3826	5	0	3	0	1	1	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	t0013	3828	5	0	0	0	0	5	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	t0014	3832	3	2	0	1	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	t0015	3828	2	0	2	0	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	t0016	3828	1	0	0	1	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	t0017	3830	1	1	0	0	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	t0018	3828	1	1	0	0	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	t0019	3828	1	0	0	1	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	t0020	3828	1	0	0	1	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	t0021	3828	1	0	0	1	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	t0022	3830	1	1	0	0	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	t0023	3828	1	1	0	0	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	t0024	3828	1	0	1	0	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	t0025	3828	1	0	1	0	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	t0026	3826	1	1	0	0	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	t0027	3829	1	0	0	1	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	t0028	3828	1	1	0	0	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	t0029	3828	1	1	0	0	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	t0030	3830	1	0	0	1	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	t0031	3828	1	1	0	0	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L4_chr8_94714900_94798836	1/0	t0001	4026	190	49	46	73	5	16	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	t0002	4026	32	0	0	26	1	5	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	t0003	4025	13	11	2	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	t0004	4028	6	5	1	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	t0005	4026	5	5	0	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	t0006	4026	4	0	0	4	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	t0007	4027	3	3	0	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	t0008	4026	3	3	0	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	t0009	4026	3	0	0	0	0	3	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	t0010	4026	3	3	0	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	t0011	4026	3	0	0	3	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	t0012	4026	3	2	1	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	t0013	4026	2	2	0	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/1	t0014	4026	2	0	1	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	t0015	4026	1	0	0	1	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	t0016	4026	1	1	0	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	t0017	4010	1	1	0	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	t0018	4026	1	1	0	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836