JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DPY19L4_chr8_94714900_94798836	0/0	t0019	4026	1	1	0	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	t0020	4026	1	0	0	1	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	t0021	4026	1	1	0	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	t0022	4026	1	0	0	1	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	t0023	4026	1	0	0	0	0	1	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	t0024	4026	1	0	1	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	t0025	4028	1	1	0	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	t0026	4026	1	1	0	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	t0027	4028	1	1	0	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	t0028	4026	1	1	0	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	t0029	4026	1	0	0	1	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	t0030	4028	1	1	0	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	t0031	4025	1	1	0	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	t0032	4026	1	0	0	0	0	1	copy fasta	DPY19L4	chr8	94714900	94798836
DPY30_chr2_32018905_32044805	1/1	t0001	389	377	90	67	170	14	34	copy fasta	DPY30	chr2	32018905	32044805
DPY30_chr2_32018905_32044805	0/0	t0002	389	3	3	0	0	0	0	copy fasta	DPY30	chr2	32018905	32044805
DPY30_chr2_32018905_32044805	0/0	t0003	389	2	0	1	0	0	1	copy fasta	DPY30	chr2	32018905	32044805
DPY30_chr2_32018905_32044805	0/0	t0004	389	1	1	0	0	0	0	copy fasta	DPY30	chr2	32018905	32044805
DPY30_chr2_32018905_32044805	0/0	t0005	389	1	0	0	0	0	1	copy fasta	DPY30	chr2	32018905	32044805
DPYD_chr1_97072743_97926034	1/0	t0001	1346	22	16	2	0	1	2	copy fasta	DPYD	chr1	97072743	97926034
DPYD_chr1_97072743_97926034	0/1	t0002	1346	17	9	2	1	1	3	copy fasta	DPYD	chr1	97072743	97926034
DPYD_chr1_97072743_97926034	0/0	t0003	1346	6	3	1	2	0	0	copy fasta	DPYD	chr1	97072743	97926034
DPYD_chr1_97072743_97926034	0/0	t0004	1346	5	3	1	0	0	1	copy fasta	DPYD	chr1	97072743	97926034
DPYD_chr1_97072743_97926034	0/0	t0005	1346	1	0	0	1	0	0	copy fasta	DPYD	chr1	97072743	97926034
DPYD_chr1_97072743_97926034	0/0	t0006	1346	1	1	0	0	0	0	copy fasta	DPYD	chr1	97072743	97926034
DPYSL2_chr8_26509031_26663175	1/0	t0001	2765	68	3	15	39	3	7	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0002	2765	43	12	7	15	4	5	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0003	2765	27	5	6	13	0	3	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0004	2765	25	2	1	20	0	2	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0005	2766	20	10	5	0	0	5	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0006	2765	17	7	4	0	0	6	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0007	2764	13	1	4	0	1	7	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0008	2766	8	7	1	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0009	2766	8	0	1	5	0	2	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0010	2764	7	5	0	2	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0011	2765	6	0	4	0	2	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0012	2766	5	0	0	5	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0013	2765	5	0	3	0	0	2	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0014	2766	4	4	0	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0015	2765	4	0	4	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0016	2768	3	2	1	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0017	2764	3	3	0	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0018	2765	3	3	0	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0019	2764	3	3	0	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0020	2766	3	0	1	1	1	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0021	2768	2	2	0	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0022	2766	2	2	0	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0023	2765	2	0	2	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0024	2766	2	2	0	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0025	2766	2	2	0	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175