JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DPYSL2_chr8_26509031_26663175	0/0	t0026	2764	2	0	0	0	0	2	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0027	2765	2	0	0	2	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0028	2764	1	1	0	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0029	2764	1	1	0	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0030	2764	1	1	0	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0031	2765	1	0	0	1	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0032	2764	1	0	0	1	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0033	2767	1	0	0	1	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0034	2764	1	1	0	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0035	2763	1	0	1	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0036	2763	1	1	0	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0037	2766	1	1	0	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0038	2766	1	1	0	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0039	2764	1	0	0	0	1	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0040	2767	1	1	0	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0041	2765	1	0	0	0	1	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0042	2765	1	0	0	0	1	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/1	t0043	2765	1	0	0	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0044	2765	1	1	0	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0045	2765	1	0	1	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0046	2765	1	0	1	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0047	2765	1	0	1	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0048	2765	1	1	0	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0049	2764	1	0	1	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0050	2765	1	1	0	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0051	2766	1	0	0	0	0	1	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0052	2764	1	1	0	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0053	2766	1	0	0	1	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	t0054	2765	1	1	0	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL3_chr5_147385808_147515068	1/1	t0001	3438	117	30	32	22	7	24	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	t0002	3438	104	19	23	52	1	9	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	t0003	3438	26	0	2	24	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	t0004	3438	11	11	0	0	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	t0005	3438	10	10	0	0	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	t0006	3438	6	6	0	0	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	t0007	3438	4	4	0	0	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	t0008	3438	3	2	1	0	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	t0009	3438	2	1	1	0	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	t0010	3438	2	2	0	0	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	t0011	3438	1	0	0	1	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	t0012	3438	1	0	0	1	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	t0013	3438	1	1	0	0	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	t0014	3438	1	1	0	0	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	t0015	3438	1	0	1	0	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	t0016	3438	1	1	0	0	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	t0017	3438	1	0	1	0	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	t0018	3438	1	1	0	0	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	t0019	3438	1	0	1	0	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	t0020	3438	1	1	0	0	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	t0021	3438	1	0	0	0	0	1	copy fasta	DPYSL3	chr5	147385808	147515068