JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DPYSL5_chr2_26843132_26955351	0/0	t0012	3504	4	3	1	0	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0013	3484	4	2	2	0	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0014	3478	4	4	0	0	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0015	3481	3	1	2	0	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0016	3486	3	3	0	0	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0017	3483	2	0	2	0	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0018	3483	2	0	0	0	0	2	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0019	3479	2	0	0	1	1	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0020	3483	2	2	0	0	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0021	3490	2	2	0	0	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0022	3486	2	2	0	0	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0023	3484	2	2	0	0	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0024	3500	2	1	1	0	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0025	3484	1	1	0	0	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0026	3483	1	0	0	1	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0027	3487	1	1	0	0	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0028	3481	1	0	0	0	1	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0029	3497	1	0	1	0	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0030	3487	1	1	0	0	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0031	3483	1	1	0	0	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0032	3488	1	1	0	0	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0033	3504	1	1	0	0	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0034	3504	1	1	0	0	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0035	3486	1	0	0	1	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0036	3484	1	0	1	0	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0037	3500	1	1	0	0	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0038	3480	1	1	0	0	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0039	3478	1	1	0	0	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0040	3478	1	1	0	0	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0041	3478	1	0	1	0	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0042	3486	1	0	0	1	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYS_chr8_104374431_104472055	0/1	t0001	563	219	44	37	103	11	23	copy fasta	DPYS	chr8	104374431	104472055
DPYS_chr8_104374431_104472055	1/0	t0002	563	75	18	23	19	4	10	copy fasta	DPYS	chr8	104374431	104472055
DPYS_chr8_104374431_104472055	0/0	t0003	564	40	3	9	21	1	6	copy fasta	DPYS	chr8	104374431	104472055
DPYS_chr8_104374431_104472055	0/0	t0004	564	25	3	2	19	0	1	copy fasta	DPYS	chr8	104374431	104472055
DPYS_chr8_104374431_104472055	0/0	t0005	563	9	7	0	2	0	0	copy fasta	DPYS	chr8	104374431	104472055
DPYS_chr8_104374431_104472055	0/0	t0006	563	7	6	1	0	0	0	copy fasta	DPYS	chr8	104374431	104472055
DPYS_chr8_104374431_104472055	0/0	t0007	563	2	0	0	2	0	0	copy fasta	DPYS	chr8	104374431	104472055
DPYS_chr8_104374431_104472055	0/0	t0008	563	2	2	0	0	0	0	copy fasta	DPYS	chr8	104374431	104472055
DPYS_chr8_104374431_104472055	0/0	t0009	563	1	1	0	0	0	0	copy fasta	DPYS	chr8	104374431	104472055
DQX1_chr2_74513131_74531231	1/1	t0001	431	343	87	67	147	10	30	copy fasta	DQX1	chr2	74513131	74531231
DQX1_chr2_74513131_74531231	0/0	t0002	432	6	6	0	0	0	0	copy fasta	DQX1	chr2	74513131	74531231
DQX1_chr2_74513131_74531231	0/0	t0003	431	5	4	1	0	0	0	copy fasta	DQX1	chr2	74513131	74531231
DQX1_chr2_74513131_74531231	0/0	t0004	431	1	1	0	0	0	0	copy fasta	DQX1	chr2	74513131	74531231
DQX1_chr2_74513131_74531231	0/0	t0005	431	1	0	0	1	0	0	copy fasta	DQX1	chr2	74513131	74531231
DR1_chr1_93340907_93374493	0/0	t0001	9588	57	2	14	35	1	5	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0002	9590	57	2	19	26	4	6	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0003	9591	20	0	0	19	0	1	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0004	9592	18	1	6	7	0	4	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0005	9593	17	4	10	0	2	1	copy fasta	DR1	chr1	93340907	93374493