JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DR1_chr1_93340907_93374493	0/0	t0006	9587	13	0	1	11	0	1	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0007	9589	8	8	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0008	9601	7	0	0	7	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0009	9598	5	5	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0010	9589	5	0	0	4	0	1	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0011	9591	5	0	3	1	0	1	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0012	9594	5	5	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0013	9594	4	4	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0014	9596	3	2	1	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0015	9597	3	3	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	1/0	t0016	9594	3	1	1	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0017	9590	3	0	3	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0018	9588	3	0	1	1	0	1	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0019	9588	2	1	1	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0020	9597	2	2	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0021	9598	2	2	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0022	9597	2	2	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0023	9596	2	1	1	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0024	9598	2	2	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0025	9491	2	0	0	2	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0026	9588	2	2	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0027	9594	2	1	0	0	0	1	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0028	9594	2	0	0	0	2	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0029	9595	2	2	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0030	9594	2	2	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0031	9588	2	0	0	2	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0032	9590	2	0	1	0	0	1	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0033	9592	2	0	0	0	2	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0034	9590	2	0	0	2	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0035	9589	2	2	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0036	9592	2	2	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0037	9593	2	2	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0038	9593	2	0	0	0	0	2	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0039	9594	2	2	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0040	9589	2	0	0	2	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0041	9594	2	2	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0042	9588	1	0	0	1	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0043	9585	1	1	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0044	9585	1	1	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0045	9595	1	1	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0046	9597	1	1	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0047	9597	1	1	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0048	9597	1	1	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0049	9597	1	1	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0050	9598	1	1	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0051	9598	1	1	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0052	9596	1	1	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0053	9602	1	0	0	1	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0054	9595	1	1	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0055	9597	1	1	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493