JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DR1_chr1_93340907_93374493	0/0	t0056	9597	1	1	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0057	9594	1	1	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0058	9593	1	1	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0059	9595	1	1	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0060	9592	1	0	0	1	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0061	9589	1	1	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0062	9593	1	1	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0063	9549	1	0	1	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0064	9595	1	1	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0065	9595	1	1	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0066	9593	1	0	0	0	1	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0067	9595	1	0	1	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0068	9594	1	1	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0069	9595	1	1	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0070	9589	1	0	0	0	0	1	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0071	9591	1	0	0	1	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0072	9593	1	1	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0073	9589	1	0	0	1	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0074	9588	1	0	0	1	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0075	9588	1	0	0	1	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0076	9586	1	0	1	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0077	9587	1	0	0	1	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0078	9587	1	0	0	1	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0079	9588	1	0	0	0	0	1	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0080	9589	1	0	0	1	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0081	9588	1	0	0	1	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0082	9589	1	0	0	1	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0083	9588	1	0	0	1	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0084	9588	1	0	0	1	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0085	9588	1	0	0	0	1	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0086	9587	1	0	0	1	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0087	9588	1	0	0	1	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0088	9588	1	0	0	1	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0089	9589	1	0	0	1	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0090	9592	1	0	1	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0091	9587	1	0	0	0	0	1	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0092	9591	1	0	1	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0093	9599	1	0	0	1	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0094	9592	1	1	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0095	9589	1	0	0	0	1	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0096	9590	1	1	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0097	9588	1	1	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0098	9588	1	0	1	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0099	9589	1	0	1	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0100	9589	1	0	0	1	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0101	9589	1	0	1	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0102	9590	1	0	0	0	1	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0103	9590	1	0	0	1	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0104	9590	1	0	0	0	0	1	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0105	9590	1	0	0	1	0	0	copy fasta	DR1	chr1	93340907	93374493