JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DR1_chr1_93340907_93374493	0/1	t0106	9590	1	0	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0107	9590	1	1	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0108	9591	1	0	0	0	0	1	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0109	9589	1	0	0	1	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0110	9591	1	1	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0111	9590	1	0	0	1	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0112	9591	1	0	0	1	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0113	9593	1	0	0	1	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0114	9593	1	0	0	1	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0115	9588	1	0	0	1	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0116	9587	1	0	0	1	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0117	9587	1	0	0	0	1	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0118	9591	1	0	1	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	t0119	9589	1	0	1	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DRAM1_chr12_101872580_101928612	1/0	t0001	2563	130	15	27	66	6	15	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0002	2563	83	2	18	55	1	7	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/1	t0003	2563	49	19	6	18	2	3	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0004	2563	35	0	0	31	0	4	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0005	2563	10	9	1	0	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0006	2563	9	9	0	0	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0007	2567	7	7	0	0	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0008	2563	6	0	6	0	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0009	2563	6	6	0	0	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0010	2563	5	0	0	5	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0011	2563	4	0	3	0	0	1	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0012	2563	4	4	0	0	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0013	2563	3	0	3	0	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0014	2563	3	3	0	0	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0015	2563	3	3	0	0	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0016	2563	3	0	0	2	0	1	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0017	2563	2	2	0	0	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0018	2563	2	2	0	0	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0019	2566	2	2	0	0	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0020	2566	2	2	0	0	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0021	2563	2	0	0	2	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0022	2563	1	0	0	1	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0023	2563	1	0	0	1	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0024	2563	1	1	0	0	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0025	2563	1	0	0	0	0	1	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0026	2563	1	0	1	0	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0027	2563	1	1	0	0	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0028	2563	1	1	0	0	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0029	2563	1	1	0	0	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0030	2563	1	0	0	1	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0031	2563	1	1	0	0	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0032	2563	1	0	0	1	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0033	2563	1	0	0	1	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0034	2563	1	1	0	0	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0035	2563	1	1	0	0	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0036	2563	1	0	0	1	0	0	copy fasta	DRAM1	chr12	101872580	101928612