Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AGAP4_chr10_45820594_45852500	1/1	t0001	475	372	86	79	155	10	40	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	t0002	475	5	0	0	4	0	1	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	t0003	475	1	0	1	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	t0004	475	1	1	0	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	t0005	475	1	0	0	1	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	t0006	475	1	0	0	0	0	1	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	t0007	475	1	1	0	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP5_chr10_73669295_73703109	1/1	t0001	659	341	86	50	158	7	38	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	t0002	659	13	0	0	13	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	t0003	659	5	0	0	0	0	5	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	t0004	659	2	0	0	2	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	t0005	659	2	0	2	0	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	t0006	659	1	1	0	0	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	t0007	659	1	1	0	0	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	t0008	659	1	0	0	1	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	t0009	659	1	0	0	0	1	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	t0010	659	1	0	0	0	0	1	copy fasta	AGAP5	chr10	73669295	73703109
AGAP6_chr10_49983406_50015499	1/1	t0001	624	275	64	59	115	9	26	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	t0002	622	52	0	0	52	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	t0003	624	36	4	10	14	1	7	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	t0004	624	32	20	3	7	1	1	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	t0005	624	2	2	0	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	t0006	624	2	2	0	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	t0007	624	2	2	0	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	t0008	624	1	0	1	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	t0009	624	1	0	0	0	1	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	t0010	624	1	1	0	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	t0011	624	1	1	0	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	t0012	624	1	0	1	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP9_chr10_47496854_47528638	1/1	t0001	411	162	30	35	55	14	26	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	t0002	411	25	16	5	0	0	4	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	t0003	411	6	5	1	0	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	t0004	411	6	6	0	0	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	t0005	411	3	0	0	3	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	t0006	299	3	2	1	0	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	t0007	411	1	1	0	0	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGA_chr4_177425774_177447437	1/0	t0001	997	217	70	28	89	8	21	copy fasta	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/1	t0002	997	193	22	48	90	8	24	copy fasta	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	t0003	997	13	0	0	12	0	1	copy fasta	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	t0004	997	11	0	0	11	0	0	copy fasta	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	t0005	997	3	0	1	2	0	0	copy fasta	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	t0006	997	2	2	0	0	0	0	copy fasta	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	t0007	997	1	1	0	0	0	0	copy fasta	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	t0008	997	1	1	0	0	0	0	copy fasta	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	t0009	997	1	0	1	0	0	0	copy fasta	AGA	chr4	177425774	177447437
AGBL1_chr15_86074871_86921156	0/0	t0001	8965	21	7	5	4	0	5	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	t0002	8965	8	0	3	3	0	2	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	t0003	8963	6	5	1	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	t0004	8963	4	0	0	1	0	3	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	t0005	8955	4	2	1	1	0	0	copy fasta	AGBL1	chr15	86074871	86921156