JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DRAM1_chr12_101872580_101928612	0/0	t0037	2566	1	1	0	0	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0038	2570	1	1	0	0	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0039	2566	1	0	1	0	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0040	2567	1	1	0	0	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0041	2563	1	1	0	0	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0042	2563	1	0	0	0	1	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0043	2563	1	1	0	0	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0044	2563	1	1	0	0	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0045	2563	1	0	0	1	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0046	2563	1	0	0	1	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	t0047	2563	1	0	0	1	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM2_chr1_111112163_111145093	1/1	t0001	1298	266	55	58	116	9	26	copy fasta	DRAM2	chr1	111112163	111145093
DRAM2_chr1_111112163_111145093	0/0	t0002	1298	115	22	18	64	1	10	copy fasta	DRAM2	chr1	111112163	111145093
DRAM2_chr1_111112163_111145093	0/0	t0003	1298	27	3	3	16	0	5	copy fasta	DRAM2	chr1	111112163	111145093
DRAM2_chr1_111112163_111145093	0/0	t0004	1298	7	6	1	0	0	0	copy fasta	DRAM2	chr1	111112163	111145093
DRAM2_chr1_111112163_111145093	0/0	t0005	1298	5	0	0	4	0	1	copy fasta	DRAM2	chr1	111112163	111145093
DRAM2_chr1_111112163_111145093	0/0	t0006	1298	4	0	0	0	0	4	copy fasta	DRAM2	chr1	111112163	111145093
DRAM2_chr1_111112163_111145093	0/0	t0007	1298	4	3	1	0	0	0	copy fasta	DRAM2	chr1	111112163	111145093
DRAM2_chr1_111112163_111145093	0/0	t0008	1298	3	0	0	3	0	0	copy fasta	DRAM2	chr1	111112163	111145093
DRAM2_chr1_111112163_111145093	0/0	t0009	1298	2	2	0	0	0	0	copy fasta	DRAM2	chr1	111112163	111145093
DRAM2_chr1_111112163_111145093	0/0	t0010	1298	1	1	0	0	0	0	copy fasta	DRAM2	chr1	111112163	111145093
DRAM2_chr1_111112163_111145093	0/0	t0011	1298	1	1	0	0	0	0	copy fasta	DRAM2	chr1	111112163	111145093
DRAM2_chr1_111112163_111145093	0/0	t0012	1288	1	1	0	0	0	0	copy fasta	DRAM2	chr1	111112163	111145093
DRAM2_chr1_111112163_111145093	0/0	t0013	1298	1	1	0	0	0	0	copy fasta	DRAM2	chr1	111112163	111145093
DRAM2_chr1_111112163_111145093	0/0	t0014	1298	1	1	0	0	0	0	copy fasta	DRAM2	chr1	111112163	111145093
DRAM2_chr1_111112163_111145093	0/0	t0015	1298	1	0	1	0	0	0	copy fasta	DRAM2	chr1	111112163	111145093
DRAM2_chr1_111112163_111145093	0/0	t0016	1298	1	0	0	1	0	0	copy fasta	DRAM2	chr1	111112163	111145093
DRAP1_chr11_65914426_65926563	1/1	t0001	205	401	98	71	180	12	38	copy fasta	DRAP1	chr11	65914426	65926563
DRAP1_chr11_65914426_65926563	0/0	t0002	205	1	0	1	0	0	0	copy fasta	DRAP1	chr11	65914426	65926563
DRAXIN_chr1_11686710_11730857	0/0	t0001	6319	89	5	26	44	2	12	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0002	6316	76	2	13	50	3	8	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0003	6319	36	5	1	19	1	10	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0004	6317	22	3	10	0	5	4	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0005	6317	11	0	0	11	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0006	6317	10	1	0	7	0	2	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	1/0	t0007	6316	6	5	0	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0008	6317	5	5	0	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0009	6317	5	0	3	0	2	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0010	6316	5	0	3	0	2	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0011	6319	4	4	0	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0012	6320	4	0	3	1	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0013	6317	4	3	1	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0014	6320	3	0	0	3	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0015	6320	3	3	0	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0016	6316	3	3	0	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0017	6319	3	3	0	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0018	6317	3	1	1	0	0	1	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0019	6316	3	0	0	2	1	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0020	6316	3	0	0	3	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0021	6319	3	3	0	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857