JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DRAXIN_chr1_11686710_11730857	0/0	t0072	6318	1	0	0	1	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0073	6317	1	0	0	1	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0074	6319	1	1	0	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0075	6317	1	1	0	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0076	6319	1	1	0	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/1	t0077	6317	1	0	0	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0078	6315	1	0	0	1	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0079	6316	1	0	1	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0080	6317	1	0	1	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0081	6315	1	1	0	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0082	6316	1	1	0	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0083	6315	1	0	0	1	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0084	6320	1	1	0	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0085	6319	1	1	0	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0086	6316	1	0	0	1	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0087	6322	1	1	0	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0088	6319	1	1	0	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0089	6321	1	1	0	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0090	6318	1	0	1	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0091	6317	1	0	0	0	0	1	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0092	6317	1	0	0	0	0	1	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0093	6317	1	0	0	1	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0094	6316	1	0	1	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0095	6295	1	0	0	1	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0096	6319	1	1	0	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0097	6317	1	0	1	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	t0098	6317	1	1	0	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRC1_chr2_26396920_26461711	1/0	t0001	265	322	67	70	146	8	30	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	t0002	265	26	1	2	23	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	t0003	265	25	24	1	0	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/1	t0004	265	6	0	1	0	2	2	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	t0005	265	2	2	0	0	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	t0006	265	1	0	0	1	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	t0007	265	1	1	0	0	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	t0008	265	1	1	0	0	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC3_chr17_17967862_18021889	0/0	t0001	458	122	27	25	56	3	11	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	1/0	t0002	460	109	42	33	20	7	6	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/1	t0003	458	59	5	8	44	0	1	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	t0004	459	10	9	1	0	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	t0005	454	10	0	0	10	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	t0006	459	5	3	1	1	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	t0007	460	3	0	3	0	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	t0008	459	2	0	0	2	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	t0009	458	1	0	0	1	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	t0010	459	1	1	0	0	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	t0011	458	1	1	0	0	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	t0012	460	1	0	1	0	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC7_chr16_57689806_57736805	1/1	t0001	763	287	47	59	132	8	39	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	t0002	763	58	13	8	23	6	8	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	t0003	763	20	20	0	0	0	0	copy fasta	DRC7	chr16	57689806	57736805