JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DRC7_chr16_57689806_57736805	0/0	t0004	763	8	6	1	1	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	t0005	763	6	0	0	6	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	t0006	763	6	0	0	3	0	3	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	t0007	763	1	0	0	1	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	t0008	763	1	1	0	0	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	t0009	763	1	1	0	0	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRD1_chr5_175435036_175449182	0/1	t0001	2691	131	12	34	68	2	14	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	t0002	2691	91	8	7	65	2	9	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	1/0	t0003	2691	86	1	26	29	7	22	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	t0004	2691	81	13	8	49	7	4	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	t0005	2691	28	24	4	0	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	t0006	2691	10	10	0	0	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	t0007	2691	9	0	0	9	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	t0008	2691	7	4	3	0	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	t0009	2691	6	6	0	0	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	t0010	2691	5	5	0	0	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	t0011	2691	3	1	2	0	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	t0012	2691	3	0	0	3	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	t0013	2691	3	3	0	0	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	t0014	2691	3	3	0	0	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	t0015	2689	3	3	0	0	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	t0016	2689	3	0	0	3	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	t0017	2691	2	2	0	0	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	t0018	2691	2	0	0	2	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	t0019	2691	2	0	0	2	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	t0020	2691	1	1	0	0	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	t0021	2691	1	1	0	0	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	t0022	2691	1	1	0	0	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	t0023	2691	1	0	0	1	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	t0024	2691	1	0	0	1	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	t0025	2691	1	1	0	0	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	t0026	2655	1	1	0	0	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	t0027	2691	1	0	0	1	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	t0028	2691	1	0	0	0	0	1	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	t0029	2691	1	0	0	1	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	t0030	2691	1	0	0	1	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	t0031	2691	1	0	0	1	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD2_chr11_113404605_113480398	0/0	t0001	1477	121	18	19	61	3	20	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/1	t0002	1477	64	4	30	15	5	9	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	t0003	1477	51	2	14	30	0	5	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	1/0	t0004	1477	33	15	5	10	0	2	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	t0005	1477	17	0	2	15	0	0	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	t0006	1477	8	8	0	0	0	0	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	t0007	1477	7	6	1	0	0	0	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	t0008	1477	4	0	0	4	0	0	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	t0009	1477	4	4	0	0	0	0	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	t0010	1477	4	4	0	0	0	0	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	t0011	1477	3	1	1	1	0	0	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	t0012	1477	3	2	1	0	0	0	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	t0013	1477	3	3	0	0	0	0	copy fasta	DRD2	chr11	113404605	113480398