JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DRD2_chr11_113404605_113480398	0/0	t0014	1477	2	2	0	0	0	0	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	t0015	1477	2	0	0	0	0	2	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	t0016	1477	2	2	0	0	0	0	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	t0017	1477	1	0	0	1	0	0	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	t0018	1477	1	1	0	0	0	0	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	t0019	1477	1	1	0	0	0	0	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	t0020	1477	1	0	0	1	0	0	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	t0021	1477	1	0	0	1	0	0	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	t0022	1477	1	0	0	1	0	0	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	t0023	1477	1	0	0	1	0	0	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	t0024	1477	1	1	0	0	0	0	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	t0025	1477	1	0	0	1	0	0	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	t0026	1477	1	0	1	0	0	0	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	t0027	1477	1	1	0	0	0	0	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	t0028	1477	1	1	0	0	0	0	copy fasta	DRD2	chr11	113404605	113480398
DRD3_chr3_114122580_114184052	0/0	t0001	1568	169	52	35	61	7	14	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	t0002	1568	70	3	12	38	5	12	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	t0003	1568	47	22	4	16	0	5	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	t0004	1568	38	9	7	16	0	6	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	t0005	1568	9	0	4	2	1	2	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	t0006	1568	4	3	0	1	0	0	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	t0007	1568	4	0	2	0	0	2	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	t0008	1568	3	1	2	0	0	0	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	1/0	t0009	1568	3	2	0	0	0	0	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	t0010	1568	2	0	0	2	0	0	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/1	t0011	1568	2	0	0	0	1	0	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	t0012	1568	2	0	1	0	0	1	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	t0013	1568	2	0	0	2	0	0	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	t0014	1568	1	1	0	0	0	0	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	t0015	1568	1	0	1	0	0	0	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	t0016	1568	1	1	0	0	0	0	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	t0017	1568	1	0	0	0	0	1	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	t0018	1568	1	0	0	0	0	1	copy fasta	DRD3	chr3	114122580	114184052
DRD4_chr11_632269_645706	0/1	t0001	140	410	91	77	185	15	41	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	t0002	140	6	1	1	0	1	3	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	t0003	140	3	3	0	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	t0004	140	1	0	0	1	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	t0005	140	1	1	0	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD5_chr4_9776634_9789009	0/0	t0001	943	203	49	30	93	10	21	copy fasta	DRD5	chr4	9776634	9789009
DRD5_chr4_9776634_9789009	0/1	t0002	943	141	36	31	49	8	16	copy fasta	DRD5	chr4	9776634	9789009
DRD5_chr4_9776634_9789009	1/0	t0003	943	71	6	10	45	0	9	copy fasta	DRD5	chr4	9776634	9789009
DRD5_chr4_9776634_9789009	0/0	t0004	943	28	1	6	21	0	0	copy fasta	DRD5	chr4	9776634	9789009
DRD5_chr4_9776634_9789009	0/0	t0005	943	4	0	0	4	0	0	copy fasta	DRD5	chr4	9776634	9789009
DRD5_chr4_9776634_9789009	0/0	t0006	943	3	3	0	0	0	0	copy fasta	DRD5	chr4	9776634	9789009
DRD5_chr4_9776634_9789009	0/0	t0007	943	1	1	0	0	0	0	copy fasta	DRD5	chr4	9776634	9789009
DRD5_chr4_9776634_9789009	0/0	t0008	943	1	0	0	1	0	0	copy fasta	DRD5	chr4	9776634	9789009
DRD5_chr4_9776634_9789009	0/0	t0009	943	1	0	0	1	0	0	copy fasta	DRD5	chr4	9776634	9789009
DRD5_chr4_9776634_9789009	0/0	t0010	943	1	0	1	0	0	0	copy fasta	DRD5	chr4	9776634	9789009
DRG1_chr22_31394604_31439452	0/0	t0001	562	211	19	30	136	8	18	copy fasta	DRG1	chr22	31394604	31439452
DRG1_chr22_31394604_31439452	0/1	t0002	562	82	41	13	4	5	18	copy fasta	DRG1	chr22	31394604	31439452