JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DRG1_chr22_31394604_31439452	1/0	t0003	562	45	18	17	2	1	6	copy fasta	DRG1	chr22	31394604	31439452
DRG1_chr22_31394604_31439452	0/0	t0004	562	5	5	0	0	0	0	copy fasta	DRG1	chr22	31394604	31439452
DRG1_chr22_31394604_31439452	0/0	t0005	562	5	0	0	5	0	0	copy fasta	DRG1	chr22	31394604	31439452
DRG1_chr22_31394604_31439452	0/0	t0006	562	1	1	0	0	0	0	copy fasta	DRG1	chr22	31394604	31439452
DRG1_chr22_31394604_31439452	0/0	t0007	562	1	0	0	1	0	0	copy fasta	DRG1	chr22	31394604	31439452
DRG2_chr17_18082948_18112969	0/0	t0001	806	235	50	35	113	5	32	copy fasta	DRG2	chr17	18082948	18112969
DRG2_chr17_18082948_18112969	1/0	t0002	806	148	34	44	49	13	7	copy fasta	DRG2	chr17	18082948	18112969
DRG2_chr17_18082948_18112969	0/0	t0003	806	23	1	0	21	0	1	copy fasta	DRG2	chr17	18082948	18112969
DRG2_chr17_18082948_18112969	0/0	t0004	806	3	3	0	0	0	0	copy fasta	DRG2	chr17	18082948	18112969
DRG2_chr17_18082948_18112969	0/0	t0005	806	3	3	0	0	0	0	copy fasta	DRG2	chr17	18082948	18112969
DRG2_chr17_18082948_18112969	0/1	t0006	806	1	0	0	0	0	0	copy fasta	DRG2	chr17	18082948	18112969
DRG2_chr17_18082948_18112969	0/0	t0007	806	1	0	0	1	0	0	copy fasta	DRG2	chr17	18082948	18112969
DRG2_chr17_18082948_18112969	0/0	t0008	806	1	0	1	0	0	0	copy fasta	DRG2	chr17	18082948	18112969
DRG2_chr17_18082948_18112969	0/0	t0009	806	1	0	0	1	0	0	copy fasta	DRG2	chr17	18082948	18112969
DRG2_chr17_18082948_18112969	0/0	t0010	806	1	1	0	0	0	0	copy fasta	DRG2	chr17	18082948	18112969
DRG2_chr17_18082948_18112969	0/0	t0011	806	1	0	0	1	0	0	copy fasta	DRG2	chr17	18082948	18112969
DRGX_chr10_49359066_49401089	1/0	t0001	2287	279	57	43	134	16	28	copy fasta	DRGX	chr10	49359066	49401089
DRGX_chr10_49359066_49401089	0/0	t0002	2287	19	1	8	8	0	2	copy fasta	DRGX	chr10	49359066	49401089
DRGX_chr10_49359066_49401089	0/1	t0003	2288	15	11	3	0	0	0	copy fasta	DRGX	chr10	49359066	49401089
DRGX_chr10_49359066_49401089	0/0	t0004	2287	7	0	0	7	0	0	copy fasta	DRGX	chr10	49359066	49401089
DRGX_chr10_49359066_49401089	0/0	t0005	2287	7	4	3	0	0	0	copy fasta	DRGX	chr10	49359066	49401089
DRGX_chr10_49359066_49401089	0/0	t0006	2287	4	4	0	0	0	0	copy fasta	DRGX	chr10	49359066	49401089
DRGX_chr10_49359066_49401089	0/0	t0007	2287	3	3	0	0	0	0	copy fasta	DRGX	chr10	49359066	49401089
DRGX_chr10_49359066_49401089	0/0	t0008	2287	3	0	0	3	0	0	copy fasta	DRGX	chr10	49359066	49401089
DRGX_chr10_49359066_49401089	0/0	t0009	2287	3	3	0	0	0	0	copy fasta	DRGX	chr10	49359066	49401089
DRGX_chr10_49359066_49401089	0/0	t0010	2287	3	0	0	0	0	3	copy fasta	DRGX	chr10	49359066	49401089
DRGX_chr10_49359066_49401089	0/0	t0011	2287	2	0	0	2	0	0	copy fasta	DRGX	chr10	49359066	49401089
DRGX_chr10_49359066_49401089	0/0	t0012	2287	2	0	0	2	0	0	copy fasta	DRGX	chr10	49359066	49401089
DRGX_chr10_49359066_49401089	0/0	t0013	2287	2	0	1	1	0	0	copy fasta	DRGX	chr10	49359066	49401089
DRGX_chr10_49359066_49401089	0/0	t0014	2287	2	0	0	1	0	1	copy fasta	DRGX	chr10	49359066	49401089
DRGX_chr10_49359066_49401089	0/0	t0015	2287	2	2	0	0	0	0	copy fasta	DRGX	chr10	49359066	49401089
DRGX_chr10_49359066_49401089	0/0	t0016	2287	2	2	0	0	0	0	copy fasta	DRGX	chr10	49359066	49401089
DRGX_chr10_49359066_49401089	0/0	t0017	2287	2	0	0	2	0	0	copy fasta	DRGX	chr10	49359066	49401089
DRGX_chr10_49359066_49401089	0/0	t0018	2287	2	2	0	0	0	0	copy fasta	DRGX	chr10	49359066	49401089
DRGX_chr10_49359066_49401089	0/0	t0019	2288	1	1	0	0	0	0	copy fasta	DRGX	chr10	49359066	49401089
DRGX_chr10_49359066_49401089	0/0	t0020	2287	1	0	1	0	0	0	copy fasta	DRGX	chr10	49359066	49401089
DRGX_chr10_49359066_49401089	0/0	t0021	2287	1	1	0	0	0	0	copy fasta	DRGX	chr10	49359066	49401089
DRGX_chr10_49359066_49401089	0/0	t0022	2287	1	1	0	0	0	0	copy fasta	DRGX	chr10	49359066	49401089
DRGX_chr10_49359066_49401089	0/0	t0023	2287	1	1	0	0	0	0	copy fasta	DRGX	chr10	49359066	49401089
DRGX_chr10_49359066_49401089	0/0	t0024	2287	1	0	1	0	0	0	copy fasta	DRGX	chr10	49359066	49401089
DRGX_chr10_49359066_49401089	0/0	t0025	2288	1	1	0	0	0	0	copy fasta	DRGX	chr10	49359066	49401089
DRGX_chr10_49359066_49401089	0/0	t0026	2288	1	1	0	0	0	0	copy fasta	DRGX	chr10	49359066	49401089
DRGX_chr10_49359066_49401089	0/0	t0027	2287	1	1	0	0	0	0	copy fasta	DRGX	chr10	49359066	49401089
DRICH1_chr22_23603452_23637321	1/0	t0001	611	255	38	44	136	10	26	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/1	t0002	611	81	4	13	55	3	5	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	t0003	611	55	27	13	3	3	9	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	t0004	611	33	8	9	13	0	3	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	t0005	611	11	11	0	0	0	0	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	t0006	611	3	2	1	0	0	0	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	t0007	611	2	2	0	0	0	0	copy fasta	DRICH1	chr22	23603452	23637321