JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DRICH1_chr22_23603452_23637321	0/0	t0008	611	1	1	0	0	0	0	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	t0009	611	1	0	0	1	0	0	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	t0010	611	1	1	0	0	0	0	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	t0011	611	1	1	0	0	0	0	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	t0012	611	1	1	0	0	0	0	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	t0013	611	1	0	0	0	0	1	copy fasta	DRICH1	chr22	23603452	23637321
DROSHA_chr5_31395494_31537093	1/1	t0001	1292	118	31	12	62	2	9	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	t0002	1292	83	24	15	30	7	7	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	t0003	1292	65	30	4	30	1	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	t0004	1292	16	0	3	6	1	6	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	t0005	1292	12	1	8	0	1	2	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	t0006	1292	9	0	0	7	0	2	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	t0007	1292	5	0	0	3	0	2	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	t0008	1292	3	2	1	0	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	t0009	1292	1	0	0	1	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	t0010	1292	1	0	0	0	0	1	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	t0011	1292	1	0	0	0	0	1	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	t0012	1292	1	0	1	0	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	t0013	1292	1	1	0	0	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	t0014	1292	1	1	0	0	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	t0015	1292	1	1	0	0	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	t0016	1292	1	0	0	1	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	t0017	1292	1	0	0	1	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	t0018	1292	1	1	0	0	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	t0019	1292	1	0	0	1	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DRP2_chrX_101214786_101269502	0/0	t0001	4408	121	13	25	61	4	18	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	t0002	4410	73	19	18	27	3	6	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	t0003	4408	17	17	0	0	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/1	t0004	4410	8	0	3	0	3	1	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	t0005	4408	6	6	0	0	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	t0006	4408	3	3	0	0	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	t0007	4408	3	0	1	1	1	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	t0008	4408	2	2	0	0	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	t0009	4408	2	2	0	0	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	t0010	4408	2	2	0	0	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	t0011	4410	2	2	0	0	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	t0012	4411	2	0	0	1	1	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	t0013	4410	1	0	0	1	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	t0014	4407	1	0	0	1	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	t0015	4408	1	0	0	1	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	t0016	4408	1	1	0	0	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	t0017	4421	1	0	0	1	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	t0018	4408	1	1	0	0	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	t0019	4408	1	0	0	0	1	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	1/0	t0020	4409	1	0	0	0	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	t0021	4408	1	1	0	0	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	t0022	4408	1	1	0	0	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	t0023	4408	1	1	0	0	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	t0024	4408	1	1	0	0	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	t0025	4410	1	0	0	1	0	0	copy fasta	DRP2	chrX	101214786	101269502