JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DRP2_chrX_101214786_101269502	0/0	t0026	4410	1	0	0	1	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	t0027	4410	1	0	0	0	0	1	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	t0028	4410	1	1	0	0	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	t0029	4408	1	1	0	0	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	t0030	4408	1	1	0	0	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	t0031	4410	1	1	0	0	0	0	copy fasta	DRP2	chrX	101214786	101269502
DSC1_chr18_31124236_31167856	1/0	t0001	1541	159	26	26	92	1	13	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	t0002	1542	149	28	25	61	10	25	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	t0003	1542	18	1	13	1	3	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/1	t0004	1546	11	7	2	0	0	1	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	t0005	1546	6	6	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	t0006	1546	6	6	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	t0007	1541	3	1	0	0	1	1	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	t0008	1546	3	1	2	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	t0009	1541	3	2	1	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	t0010	1541	3	3	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	t0011	1546	3	3	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	t0012	1541	2	1	1	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	t0013	1541	2	2	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	t0014	1542	2	2	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	t0015	1542	1	0	0	0	1	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	t0016	1541	1	1	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	t0017	1541	1	1	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	t0018	1542	1	1	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	t0019	1541	1	1	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	t0020	1546	1	1	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	t0021	1541	1	1	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	t0022	1530	1	1	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC2_chr18_31053840_31107421	0/0	t0001	9626	99	15	9	63	1	11	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	t0002	9626	41	0	16	20	2	3	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	1/0	t0003	9626	39	7	11	10	2	8	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	t0004	9625	20	1	5	13	1	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	t0005	9626	16	2	6	5	1	2	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	t0006	9626	10	0	0	6	0	4	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/1	t0007	9624	9	7	1	0	0	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	t0008	9626	8	0	7	1	0	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	t0009	9626	8	8	0	0	0	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	t0010	9627	7	3	0	3	0	1	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	t0011	9626	7	1	5	0	1	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	t0012	9625	6	4	2	0	0	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	t0013	9626	6	0	0	6	0	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	t0014	9626	6	0	1	1	1	3	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	t0015	9626	6	0	0	6	0	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	t0016	9625	3	0	1	2	0	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	t0017	9625	3	2	0	0	0	1	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	t0018	9625	3	2	0	1	0	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	t0019	9627	3	0	1	1	0	1	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	t0020	9626	3	1	1	0	1	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	t0021	9616	3	3	0	0	0	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	t0022	9625	2	2	0	0	0	0	copy fasta	DSC2	chr18	31053840	31107421