JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DSC2_chr18_31053840_31107421	0/0	t0073	9626	1	0	0	0	0	1	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	t0074	9627	1	1	0	0	0	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	t0075	9626	1	0	0	0	0	1	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	t0076	9617	1	1	0	0	0	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	t0077	9615	1	1	0	0	0	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	t0078	9616	1	1	0	0	0	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	t0079	9625	1	1	0	0	0	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	t0080	9625	1	1	0	0	0	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	t0081	9624	1	0	1	0	0	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	t0082	9626	1	0	1	0	0	0	copy fasta	DSC2	chr18	31053840	31107421
DSC3_chr18_30984365_31047742	0/0	t0001	4898	51	9	6	23	4	9	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0002	4900	26	0	1	25	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0003	4890	22	4	2	12	1	3	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	1/0	t0004	4893	19	0	11	2	3	2	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0005	4898	16	5	4	5	0	2	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0006	4893	13	0	3	10	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0007	4899	12	3	0	6	0	3	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0008	4901	8	0	2	5	0	1	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0009	4899	8	0	7	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0010	4891	6	0	3	3	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0011	4902	6	0	0	6	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0012	4889	6	2	3	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0013	4895	6	0	0	6	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0014	4898	6	6	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0015	4890	5	0	2	3	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0016	4891	5	1	2	0	0	2	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0017	4902	5	2	0	3	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0018	4889	5	0	2	0	0	3	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0019	4889	5	1	0	3	0	1	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0020	4893	4	0	0	2	2	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0021	4892	4	2	1	0	1	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/1	t0022	4898	4	0	0	3	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0023	4897	4	1	3	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0024	4898	4	4	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0025	4889	3	1	0	0	2	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0026	4901	3	0	0	0	0	3	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0027	4900	3	0	0	3	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0028	4889	3	1	2	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0029	4890	3	0	0	1	1	1	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0030	4889	3	3	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0031	4898	3	3	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0032	4891	3	3	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0033	4891	3	3	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0034	4890	3	3	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0035	4899	2	0	0	2	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0036	4895	2	0	0	2	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0037	4900	2	0	0	2	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0038	4902	2	0	1	0	0	1	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0039	4902	2	0	2	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0040	4893	2	0	0	2	0	0	copy fasta	DSC3	chr18	30984365	31047742