JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DSC3_chr18_30984365_31047742	0/0	t0041	4902	2	0	0	2	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0042	4900	2	1	0	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0043	4901	2	0	0	2	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0044	4901	2	0	2	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0045	4899	2	0	0	2	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0046	4898	2	0	0	2	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0047	4898	2	0	0	2	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0048	4898	2	0	2	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0049	4897	2	0	2	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0050	4898	2	2	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0051	4900	2	2	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0052	4899	2	2	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0053	4902	1	0	0	0	0	1	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0054	4902	1	0	0	0	0	1	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0055	4902	1	0	0	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0056	4901	1	0	0	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0057	4892	1	0	0	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0058	4897	1	0	0	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0059	4892	1	0	1	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0060	4899	1	0	0	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0061	4900	1	0	0	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0062	4898	1	0	0	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0063	4889	1	0	0	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0064	4890	1	0	0	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0065	4898	1	0	0	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0066	4900	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0067	4899	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0068	4898	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0069	4898	1	0	0	0	0	1	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0070	4893	1	0	1	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0071	4892	1	0	0	0	0	1	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0072	4899	1	0	1	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0073	4902	1	0	0	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0074	4893	1	0	1	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0075	4893	1	0	1	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0076	4902	1	0	1	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0077	4898	1	0	0	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0078	4893	1	0	0	0	0	1	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0079	4892	1	0	1	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0080	4892	1	0	0	0	1	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0081	4901	1	0	0	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0082	4901	1	0	0	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0083	4899	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0084	4899	1	0	0	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0085	4899	1	0	1	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0086	4900	1	0	0	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0087	4900	1	0	0	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0088	4900	1	0	0	0	0	1	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0089	4900	1	0	1	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0090	4891	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742