JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DSC3_chr18_30984365_31047742	0/0	t0091	4900	1	0	0	0	0	1	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0092	4898	1	0	1	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0093	4889	1	0	0	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0094	4889	1	0	0	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0095	4898	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0096	4898	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0097	4898	1	0	0	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0098	4898	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0099	4899	1	0	0	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0100	4899	1	0	0	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0101	4899	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0102	4899	1	0	0	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0103	4898	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0104	4898	1	0	1	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0105	4889	1	0	1	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0106	4898	1	0	0	0	0	1	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0107	4901	1	0	0	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0108	4890	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0109	4898	1	0	0	0	0	1	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0110	4895	1	0	0	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0111	4889	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0112	4890	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0113	4902	1	0	0	0	1	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0114	4899	1	0	1	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0115	4902	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0116	4901	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0117	4890	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0118	4898	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0119	4892	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0120	4892	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0121	4900	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0122	4900	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0123	4891	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0124	4891	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0125	4891	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0126	4891	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0127	4899	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	t0128	4900	1	0	0	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSCAML1_chr11_117422772_117802216	0/0	t0001	694	74	17	11	37	1	8	copy fasta	DSCAML1	chr11	117422772	117802216
DSCAML1_chr11_117422772_117802216	0/0	t0002	694	54	24	12	15	2	1	copy fasta	DSCAML1	chr11	117422772	117802216
DSCAML1_chr11_117422772_117802216	0/0	t0003	694	33	23	6	1	0	3	copy fasta	DSCAML1	chr11	117422772	117802216
DSCAML1_chr11_117422772_117802216	0/0	t0004	694	30	12	9	2	3	4	copy fasta	DSCAML1	chr11	117422772	117802216
DSCAML1_chr11_117422772_117802216	0/0	t0005	694	1	1	0	0	0	0	copy fasta	DSCAML1	chr11	117422772	117802216
DSCAML1_chr11_117422772_117802216	0/0	t0006	694	1	1	0	0	0	0	copy fasta	DSCAML1	chr11	117422772	117802216
DSCAML1_chr11_117422772_117802216	0/0	t0007	694	1	0	0	1	0	0	copy fasta	DSCAML1	chr11	117422772	117802216
DSCC1_chr8_119828976_119860894	1/0	t0001	1017	183	31	25	90	10	26	copy fasta	DSCC1	chr8	119828976	119860894
DSCC1_chr8_119828976_119860894	0/0	t0002	1017	122	9	34	56	4	19	copy fasta	DSCC1	chr8	119828976	119860894
DSCC1_chr8_119828976_119860894	0/1	t0003	1017	48	28	13	2	2	2	copy fasta	DSCC1	chr8	119828976	119860894
DSCC1_chr8_119828976_119860894	0/0	t0004	1017	9	9	0	0	0	0	copy fasta	DSCC1	chr8	119828976	119860894
DSCC1_chr8_119828976_119860894	0/0	t0005	1017	4	4	0	0	0	0	copy fasta	DSCC1	chr8	119828976	119860894