JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DSCC1_chr8_119828976_119860894	0/0	t0006	1017	3	3	0	0	0	0	copy fasta	DSCC1	chr8	119828976	119860894
DSCC1_chr8_119828976_119860894	0/0	t0007	1017	3	3	0	0	0	0	copy fasta	DSCC1	chr8	119828976	119860894
DSCC1_chr8_119828976_119860894	0/0	t0008	1017	3	3	0	0	0	0	copy fasta	DSCC1	chr8	119828976	119860894
DSCC1_chr8_119828976_119860894	0/0	t0009	1017	1	0	0	1	0	0	copy fasta	DSCC1	chr8	119828976	119860894
DSCC1_chr8_119828976_119860894	0/0	t0010	1017	1	0	0	0	0	1	copy fasta	DSCC1	chr8	119828976	119860894
DSCC1_chr8_119828976_119860894	0/0	t0011	1017	1	0	0	1	0	0	copy fasta	DSCC1	chr8	119828976	119860894
DSEL_chr18_67501587_67521720	0/0	t0001	5629	83	6	13	56	4	4	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0002	5628	78	17	14	40	0	7	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0003	5627	53	0	10	39	0	4	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0004	5631	17	2	4	8	3	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0005	5631	16	1	0	11	2	2	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0006	5630	14	1	2	7	0	4	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0007	5628	14	2	8	1	2	1	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0008	5629	13	13	0	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0009	5629	11	3	2	5	1	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0010	5629	10	0	1	0	1	8	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0011	5630	7	1	0	6	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0012	5625	5	5	0	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0013	5629	4	0	3	0	0	1	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0014	5629	4	0	0	3	0	1	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0015	5630	4	4	0	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0016	5628	3	3	0	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0017	5629	3	3	0	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0018	5627	3	3	0	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0019	5628	3	3	0	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0020	5632	3	1	0	2	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0021	5630	3	2	1	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0022	5627	3	0	0	3	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0023	5629	2	0	1	1	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0024	5627	2	0	1	1	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0025	5629	2	2	0	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0026	5629	2	1	1	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0027	5627	2	0	2	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0028	5629	2	0	0	0	0	2	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0029	5627	2	2	0	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0030	5627	2	0	2	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0031	5629	1	0	0	1	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0032	5629	1	0	1	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0033	5628	1	1	0	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0034	5628	1	0	0	1	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0035	5630	1	1	0	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0036	5628	1	0	1	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0037	5627	1	0	0	1	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0038	5628	1	1	0	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0039	5630	1	0	0	1	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0040	5628	1	0	1	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0041	5627	1	0	0	1	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0042	5628	1	0	1	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0043	5629	1	0	0	0	0	1	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0044	5628	1	1	0	0	0	0	copy fasta	DSEL	chr18	67501587	67521720