JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DSEL_chr18_67501587_67521720	0/1	t0045	5630	1	0	0	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0046	5628	1	0	1	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0047	5629	1	0	0	1	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0048	5630	1	1	0	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0049	5628	1	1	0	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0050	5629	1	0	0	1	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0051	5629	1	0	1	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0052	5629	1	0	0	1	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0053	5629	1	0	0	0	0	1	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0054	5631	1	0	0	1	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0055	5632	1	0	1	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0056	5631	1	0	0	0	1	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0057	5628	1	0	1	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0058	5630	1	0	0	1	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0059	5631	1	0	1	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0060	5628	1	0	1	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0061	5627	1	0	0	0	0	1	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0062	5628	1	1	0	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0063	5630	1	0	0	0	0	1	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0064	5630	1	1	0	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0065	5626	1	1	0	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0066	5631	1	0	1	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0067	5629	1	0	1	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0068	5629	1	0	1	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0069	5631	1	0	0	0	0	1	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0070	5629	1	0	0	1	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0071	5631	1	1	0	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0072	5630	1	1	0	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0073	5629	1	1	0	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0074	5630	1	1	0	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0075	5631	1	1	0	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0076	5629	1	1	0	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0077	5630	1	1	0	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0078	5629	1	1	0	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0079	5627	1	0	0	0	0	1	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0080	5629	1	0	0	0	0	1	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	t0081	5630	1	0	0	0	0	1	copy fasta	DSEL	chr18	67501587	67521720
DSE_chr6_116365947_116449861	0/0	t0001	7754	70	2	22	38	4	4	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/1	t0002	7754	65	28	9	16	3	8	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	1/0	t0003	7745	56	2	10	34	7	2	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0004	7745	30	0	1	22	0	7	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0005	7754	22	0	1	16	1	4	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0006	7754	17	0	5	11	0	1	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0007	7756	8	8	0	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0008	7745	8	1	0	0	0	7	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0009	7753	7	7	0	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0010	7753	6	0	3	2	0	1	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0011	7755	5	5	0	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0012	7755	5	5	0	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0013	7745	4	3	1	0	0	0	copy fasta	DSE	chr6	116365947	116449861