JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DSE_chr6_116365947_116449861	0/0	t0014	7745	4	0	3	0	1	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0015	7754	4	4	0	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0016	7744	3	0	3	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0017	7754	3	3	0	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0018	7754	2	0	1	0	0	1	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0019	7755	2	1	0	0	0	1	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0020	7755	2	1	1	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0021	7754	2	1	1	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0022	7754	2	0	2	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0023	7745	2	2	0	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0024	7754	2	2	0	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0025	7745	2	0	0	0	0	2	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0026	7745	1	0	0	0	0	1	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0027	7745	1	0	0	1	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0028	7745	1	0	0	1	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0029	7745	1	0	0	0	1	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0030	7745	1	0	0	1	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0031	7749	1	0	0	0	0	1	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0032	7745	1	0	0	1	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0033	7745	1	0	0	1	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0034	7745	1	0	0	1	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0035	7745	1	0	0	1	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0036	7755	1	0	0	0	1	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0037	7754	1	0	0	1	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0038	7754	1	0	1	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0039	7755	1	1	0	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0040	7754	1	0	1	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0041	7753	1	0	0	1	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0042	7754	1	0	0	1	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0043	7753	1	1	0	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0044	7754	1	1	0	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0045	7754	1	0	1	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0046	7754	1	0	1	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0047	7754	1	0	1	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0048	7755	1	1	0	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0049	7753	1	0	0	0	0	1	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0050	7754	1	0	0	0	0	1	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0051	7739	1	1	0	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0052	7745	1	1	0	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0053	7744	1	1	0	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0054	7745	1	1	0	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0055	7745	1	1	0	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0056	7745	1	1	0	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0057	7754	1	1	0	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	t0058	7745	1	0	0	1	0	0	copy fasta	DSE	chr6	116365947	116449861
DSG1_chr18_31313160_31364246	0/0	t0001	4042	112	14	20	67	3	8	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0002	4042	45	15	13	12	2	3	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/1	t0003	4042	19	6	5	1	2	4	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0004	4042	16	3	2	9	0	2	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0005	4042	15	6	1	5	1	2	copy fasta	DSG1	chr18	31313160	31364246