JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DSG1_chr18_31313160_31364246	0/0	t0006	4042	13	6	4	1	0	2	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	1/0	t0007	4042	10	0	1	5	0	3	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0008	4042	6	0	0	6	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0009	4042	6	6	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0010	4042	6	0	0	2	0	4	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0011	4042	4	2	1	0	0	1	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0012	4042	3	3	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0013	4042	3	3	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0014	4042	3	3	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0015	4042	3	3	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0016	4042	3	3	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0017	4042	2	2	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0018	4042	2	1	0	0	1	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0019	4042	2	0	0	1	0	1	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0020	4042	2	2	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0021	4042	2	2	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0022	4042	2	2	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0023	4042	2	2	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0024	4042	1	0	0	0	0	1	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0025	4042	1	0	0	1	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0026	4042	1	0	1	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0027	4042	1	0	0	1	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0028	4042	1	0	0	0	1	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0029	4042	1	1	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0030	4042	1	1	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0031	4042	1	0	0	1	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0032	4042	1	1	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0033	4042	1	0	0	1	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0034	4042	1	1	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0035	4042	1	1	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0036	4042	1	0	0	0	0	1	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0037	4042	1	0	0	1	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0038	4042	1	1	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0039	4042	1	1	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0040	4042	1	1	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0041	4042	1	0	0	1	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0042	4042	1	1	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0043	4042	1	0	0	1	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	t0044	4042	1	1	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG2_chr18_31493177_31554008	1/0	t0001	2341	119	31	26	40	6	15	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/1	t0002	2343	114	5	22	70	7	9	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	t0003	2340	42	11	5	26	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	t0004	2342	36	17	3	11	1	4	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	t0005	2340	7	7	0	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	t0006	2343	7	5	2	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	t0007	2346	5	4	1	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	t0008	2340	3	3	0	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	t0009	2339	3	0	0	3	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	t0010	2343	2	0	0	0	0	2	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	t0011	2339	2	2	0	0	0	0	copy fasta	DSG2	chr18	31493177	31554008