JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DSG2_chr18_31493177_31554008	0/0	t0012	2343	2	2	0	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	t0013	2339	2	2	0	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	t0014	2343	2	0	0	0	0	2	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	t0015	2340	1	1	0	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	t0016	2340	1	1	0	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	t0017	2343	1	1	0	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	t0018	2341	1	0	1	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	t0019	2343	1	1	0	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	t0020	2346	1	1	0	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	t0021	2339	1	1	0	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	t0022	2343	1	1	0	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG3_chr18_31442741_31483702	1/0	t0001	2580	104	11	31	54	1	6	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/1	t0002	2580	36	1	10	13	4	7	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0003	2581	34	6	6	17	2	3	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0004	2580	30	3	2	23	0	2	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0005	2581	17	2	4	5	3	3	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0006	2581	9	0	0	9	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0007	2581	9	0	0	6	0	3	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0008	2580	8	8	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0009	2580	8	1	0	4	0	3	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0010	2581	5	2	0	2	0	1	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0011	2577	5	5	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0012	2580	4	4	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0013	2580	4	4	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0014	2579	4	3	0	0	0	1	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0015	2579	4	4	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0016	2581	3	1	1	1	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0017	2577	3	3	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0018	2582	3	0	0	1	0	2	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0019	2581	3	2	1	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0020	2581	3	3	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0021	2580	2	2	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0022	2577	2	2	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0023	2579	2	2	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0024	2582	2	2	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0025	2581	2	0	2	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0026	2580	2	1	1	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0027	2580	2	2	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0028	2580	2	2	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0029	2581	2	2	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0030	2582	2	1	1	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0031	2580	2	0	1	0	0	1	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0032	2580	1	0	0	1	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0033	2580	1	0	0	1	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0034	2580	1	0	0	1	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0035	2580	1	1	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0036	2570	1	1	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0037	2579	1	0	0	0	0	1	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0038	2580	1	0	0	0	0	1	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0039	2581	1	1	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702