JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DSG3_chr18_31442741_31483702	0/0	t0040	2580	1	0	0	0	0	1	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0041	2580	1	1	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0042	2576	1	1	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0043	2580	1	0	0	0	0	1	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0044	2580	1	1	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0045	2580	1	0	0	1	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0046	2581	1	1	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0047	2581	1	0	0	1	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0048	2581	1	1	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0049	2581	1	0	1	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0050	2581	1	1	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0051	2579	1	1	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0052	2577	1	1	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0053	2581	1	1	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0054	2580	1	0	1	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0055	2581	1	0	0	1	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0056	2581	1	0	1	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0057	2580	1	1	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0058	2580	1	0	0	1	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	t0059	2580	1	0	1	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG4_chr18_31371777_31419909	0/0	t0001	1446	124	15	21	65	3	20	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	t0002	1450	69	23	5	38	1	2	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	1/1	t0003	1450	68	19	15	20	3	9	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	t0004	1450	55	11	7	26	3	8	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	t0005	1450	6	6	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	t0006	1451	6	6	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	t0007	1450	2	0	2	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	t0008	1450	2	2	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	t0009	1450	2	0	0	2	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	t0010	1451	1	1	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	t0011	1446	1	1	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	t0012	1451	1	1	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	t0013	1450	1	1	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	t0014	1446	1	0	0	1	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	t0015	1450	1	0	0	1	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	t0016	1450	1	0	0	0	0	1	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	t0017	1450	1	1	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	t0018	1450	1	1	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	t0019	1450	1	0	0	1	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSN1_chr20_36746795_36778763	1/1	t0001	1111	296	59	69	112	16	38	copy fasta	DSN1	chr20	36746795	36778763
DSN1_chr20_36746795_36778763	0/0	t0002	1114	10	8	2	0	0	0	copy fasta	DSN1	chr20	36746795	36778763
DSN1_chr20_36746795_36778763	0/0	t0003	1111	8	1	4	0	0	3	copy fasta	DSN1	chr20	36746795	36778763
DSN1_chr20_36746795_36778763	0/0	t0004	1114	5	5	0	0	0	0	copy fasta	DSN1	chr20	36746795	36778763
DSN1_chr20_36746795_36778763	0/0	t0005	1114	5	4	1	0	0	0	copy fasta	DSN1	chr20	36746795	36778763
DSN1_chr20_36746795_36778763	0/0	t0006	1111	4	0	0	4	0	0	copy fasta	DSN1	chr20	36746795	36778763
DSN1_chr20_36746795_36778763	0/0	t0007	1111	2	2	0	0	0	0	copy fasta	DSN1	chr20	36746795	36778763
DSN1_chr20_36746795_36778763	0/0	t0008	1111	1	0	0	0	0	1	copy fasta	DSN1	chr20	36746795	36778763
DSN1_chr20_36746795_36778763	0/0	t0009	1114	1	1	0	0	0	0	copy fasta	DSN1	chr20	36746795	36778763
DSPP_chr4_87603529_87621873	0/1	t0001	426	394	88	71	188	12	34	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	1/0	t0002	426	54	7	6	30	0	10	copy fasta	DSPP	chr4	87603529	87621873