JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DSPP_chr4_87603529_87621873	0/0	t0003	426	1	1	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	t0004	426	1	0	1	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSP_chr6_7536671_7591714	1/0	t0001	1082	293	60	57	138	11	26	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/1	t0002	1082	92	34	17	26	3	11	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	t0003	1082	10	0	0	10	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	t0004	1082	1	0	0	0	0	1	copy fasta	DSP	chr6	7536671	7591714
DSTN_chr20_17565075_17614919	0/0	t0001	2909	96	12	15	56	3	10	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/0	t0002	2906	61	5	15	24	5	12	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/0	t0003	2907	46	23	2	19	0	2	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	1/0	t0004	2908	30	3	9	14	0	3	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/0	t0005	2908	24	15	4	4	0	1	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/0	t0006	2907	13	11	2	0	0	0	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/0	t0007	2906	13	0	9	4	0	0	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/0	t0008	2908	8	8	0	0	0	0	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/0	t0009	2908	7	0	0	6	0	1	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/0	t0010	2906	5	5	0	0	0	0	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/0	t0011	2908	5	0	1	4	0	0	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/0	t0012	2908	4	1	1	0	0	2	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/0	t0013	2903	4	4	0	0	0	0	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/0	t0014	2908	3	0	0	3	0	0	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/0	t0015	2909	3	0	2	0	0	1	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/0	t0016	2908	3	0	2	0	0	1	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/0	t0017	2909	2	0	0	2	0	0	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/1	t0018	2909	2	0	1	0	0	0	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/0	t0019	2909	2	2	0	0	0	0	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/0	t0020	2908	2	2	0	0	0	0	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/0	t0021	2909	1	0	1	0	0	0	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/0	t0022	2909	1	0	0	1	0	0	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/0	t0023	2909	1	1	0	0	0	0	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/0	t0024	2906	1	0	0	1	0	0	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/0	t0025	2908	1	0	0	1	0	0	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/0	t0026	2907	1	0	1	0	0	0	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/0	t0027	2908	1	1	0	0	0	0	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/0	t0028	2909	1	1	0	0	0	0	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/0	t0029	2909	1	0	0	1	0	0	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/0	t0030	2909	1	0	0	1	0	0	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/0	t0031	2906	1	0	1	0	0	0	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/0	t0032	2906	1	0	0	1	0	0	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/0	t0033	2908	1	0	0	1	0	0	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/0	t0034	2909	1	0	0	1	0	0	copy fasta	DSTN	chr20	17565075	17614919
DSTN_chr20_17565075_17614919	0/0	t0035	2908	1	0	0	0	0	1	copy fasta	DSTN	chr20	17565075	17614919
DSTYK_chr1_205137505_205216702	0/0	t0001	5222	105	18	18	49	4	16	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	t0002	5217	70	0	16	44	2	8	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	1/0	t0003	5221	41	27	6	0	1	6	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/1	t0004	5222	38	4	13	10	5	5	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	t0005	5221	13	12	0	0	1	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	t0006	5219	10	0	3	5	0	2	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	t0007	5223	10	0	2	3	3	2	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	t0008	5222	7	6	1	0	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	t0009	5209	6	0	0	6	0	0	copy fasta	DSTYK	chr1	205137505	205216702