JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DSTYK_chr1_205137505_205216702	0/0	t0010	5222	6	5	1	0	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	t0011	5222	4	0	0	4	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	t0012	5221	4	3	1	0	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	t0013	5221	4	4	0	0	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	t0014	5221	4	2	2	0	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	t0015	5218	3	0	1	2	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	t0016	5220	2	0	0	2	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	t0017	5221	2	2	0	0	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	t0018	5222	2	0	0	2	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	t0019	5217	1	0	0	1	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	t0020	5220	1	0	0	1	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	t0021	5219	1	0	0	1	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	t0022	5219	1	0	0	1	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	t0023	5217	1	0	0	1	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	t0024	5218	1	0	0	1	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	t0025	5222	1	1	0	0	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	t0026	5222	1	1	0	0	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	t0027	5210	1	0	0	1	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	t0028	5223	1	1	0	0	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	t0029	5222	1	0	1	0	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	t0030	5221	1	0	0	0	0	1	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	t0031	5222	1	1	0	0	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	t0032	5222	1	0	1	0	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	t0033	5222	1	0	0	1	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	t0034	5222	1	0	0	1	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	t0035	5222	1	1	0	0	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DST_chr6_56452996_56959830	1/1	t0001	1253	77	43	12	16	2	2	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	t0002	1253	2	2	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	t0003	1253	2	2	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	t0004	1254	2	2	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	t0005	1253	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56609597_56647889	1/0	t0001	1022	182	47	36	71	8	19	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	t0002	1024	95	4	24	48	4	15	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	t0003	1023	31	29	1	1	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	t0004	1022	7	0	0	7	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	t0005	1022	3	0	0	3	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	t0006	1023	3	3	0	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/1	t0007	1022	3	0	1	0	0	1	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	t0008	1022	1	1	0	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	t0009	1023	1	0	0	0	0	1	copy fasta	DST	chr6	56609597	56647889
DTD1_chr20_18583054_18771644	1/0	t0001	3324	135	23	17	78	4	12	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	t0002	3324	87	9	18	46	5	9	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	t0003	3324	32	1	9	22	0	0	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	t0004	3324	31	26	1	0	0	4	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	t0005	3324	30	2	10	8	2	8	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	t0006	3324	15	0	12	0	2	1	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	t0007	3323	8	2	0	5	0	1	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	t0008	3324	7	2	0	0	2	3	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	t0009	3324	6	6	0	0	0	0	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	t0010	3324	4	0	2	2	0	0	copy fasta	DTD1	chr20	18583054	18771644