JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DTD1_chr20_18583054_18771644	0/0	t0011	3324	4	3	1	0	0	0	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	t0012	3324	4	4	0	0	0	0	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	t0013	3324	3	3	0	0	0	0	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	t0014	3324	3	1	2	0	0	0	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	t0015	3324	3	1	0	1	0	1	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	t0016	3324	2	0	0	2	0	0	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	t0017	3324	2	2	0	0	0	0	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	t0018	3324	2	2	0	0	0	0	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	t0019	3324	2	1	0	1	0	0	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	t0020	3324	2	0	2	0	0	0	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	t0021	3324	2	0	0	1	0	1	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	t0022	3324	1	0	0	1	0	0	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	t0023	3324	1	0	1	0	0	0	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/1	t0024	3324	1	0	0	0	0	0	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	t0025	3324	1	1	0	0	0	0	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	t0026	3324	1	1	0	0	0	0	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	t0027	3324	1	1	0	0	0	0	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	t0028	3324	1	1	0	0	0	0	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	t0029	3324	1	1	0	0	0	0	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	t0030	3324	1	1	0	0	0	0	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	t0031	3324	1	0	0	0	1	0	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	t0032	3324	1	0	0	1	0	0	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	t0033	3324	1	1	0	0	0	0	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	t0034	3324	1	1	0	0	0	0	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	t0035	3324	1	0	1	0	0	0	copy fasta	DTD1	chr20	18583054	18771644
DTD2_chr14_31441036_31462506	0/0	t0001	2206	122	14	17	75	5	11	copy fasta	DTD2	chr14	31441036	31462506
DTD2_chr14_31441036_31462506	0/0	t0002	2207	83	1	7	59	1	15	copy fasta	DTD2	chr14	31441036	31462506
DTD2_chr14_31441036_31462506	1/1	t0003	2207	74	38	18	5	3	8	copy fasta	DTD2	chr14	31441036	31462506
DTD2_chr14_31441036_31462506	0/0	t0004	2206	58	15	12	30	0	1	copy fasta	DTD2	chr14	31441036	31462506
DTD2_chr14_31441036_31462506	0/0	t0005	2208	30	2	11	16	0	1	copy fasta	DTD2	chr14	31441036	31462506
DTD2_chr14_31441036_31462506	0/0	t0006	2204	13	0	8	0	3	2	copy fasta	DTD2	chr14	31441036	31462506
DTD2_chr14_31441036_31462506	0/0	t0007	2206	4	0	0	4	0	0	copy fasta	DTD2	chr14	31441036	31462506
DTD2_chr14_31441036_31462506	0/0	t0008	2207	4	4	0	0	0	0	copy fasta	DTD2	chr14	31441036	31462506
DTD2_chr14_31441036_31462506	0/0	t0009	2207	4	4	0	0	0	0	copy fasta	DTD2	chr14	31441036	31462506
DTD2_chr14_31441036_31462506	0/0	t0010	2207	4	4	0	0	0	0	copy fasta	DTD2	chr14	31441036	31462506
DTD2_chr14_31441036_31462506	0/0	t0011	2207	3	3	0	0	0	0	copy fasta	DTD2	chr14	31441036	31462506
DTD2_chr14_31441036_31462506	0/0	t0012	2206	2	0	0	0	0	2	copy fasta	DTD2	chr14	31441036	31462506
DTD2_chr14_31441036_31462506	0/0	t0013	2207	2	2	0	0	0	0	copy fasta	DTD2	chr14	31441036	31462506
DTD2_chr14_31441036_31462506	0/0	t0014	2207	2	0	0	1	0	1	copy fasta	DTD2	chr14	31441036	31462506
DTD2_chr14_31441036_31462506	0/0	t0015	2207	2	2	0	0	0	0	copy fasta	DTD2	chr14	31441036	31462506
DTD2_chr14_31441036_31462506	0/0	t0016	2206	1	0	1	0	0	0	copy fasta	DTD2	chr14	31441036	31462506
DTD2_chr14_31441036_31462506	0/0	t0017	2207	1	0	0	1	0	0	copy fasta	DTD2	chr14	31441036	31462506
DTD2_chr14_31441036_31462506	0/0	t0018	2206	1	0	0	1	0	0	copy fasta	DTD2	chr14	31441036	31462506
DTD2_chr14_31441036_31462506	0/0	t0019	2206	1	0	0	0	0	1	copy fasta	DTD2	chr14	31441036	31462506
DTD2_chr14_31441036_31462506	0/0	t0020	2207	1	0	0	0	0	1	copy fasta	DTD2	chr14	31441036	31462506
DTD2_chr14_31441036_31462506	0/0	t0021	2207	1	0	0	0	0	1	copy fasta	DTD2	chr14	31441036	31462506
DTD2_chr14_31441036_31462506	0/0	t0022	2207	1	0	0	1	0	0	copy fasta	DTD2	chr14	31441036	31462506
DTD2_chr14_31441036_31462506	0/0	t0023	2207	1	1	0	0	0	0	copy fasta	DTD2	chr14	31441036	31462506
DTD2_chr14_31441036_31462506	0/0	t0024	2207	1	1	0	0	0	0	copy fasta	DTD2	chr14	31441036	31462506
DTD2_chr14_31441036_31462506	0/0	t0025	2207	1	0	0	1	0	0	copy fasta	DTD2	chr14	31441036	31462506