JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DTD2_chr14_31441036_31462506	0/0	t0026	2207	1	1	0	0	0	0	copy fasta	DTD2	chr14	31441036	31462506
DTHD1_chr4_36276616_36352511	1/1	t0001	3831	50	3	9	28	2	6	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	t0002	3831	31	2	9	19	1	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	t0003	3831	28	18	5	4	1	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	t0004	3831	25	20	3	0	0	2	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	t0005	3831	23	3	4	9	1	6	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	t0006	3831	23	1	6	10	3	3	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	t0007	3831	19	0	7	12	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	t0008	3831	15	11	0	4	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	t0009	3831	13	1	3	2	3	4	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	t0010	3831	13	1	3	5	2	2	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	t0011	3831	11	6	0	4	0	1	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	t0012	3831	10	9	1	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	t0013	3831	9	0	5	1	0	3	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	t0014	3831	7	6	1	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	t0015	3831	5	0	2	3	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	t0016	3831	4	0	1	2	1	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	t0017	3831	3	0	0	3	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	t0018	3831	3	2	1	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	t0019	3831	2	0	2	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	t0020	3831	2	2	0	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	t0021	3831	2	2	0	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	t0022	3831	2	2	0	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	t0023	3831	1	0	0	1	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	t0024	3831	1	1	0	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	t0025	3831	1	0	0	0	0	1	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	t0026	3831	1	1	0	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	t0027	3831	1	1	0	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	t0028	3831	1	1	0	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	t0029	3831	1	0	0	1	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	t0030	3831	1	1	0	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTL_chr1_212030748_212110013	0/0	t0001	2239	213	43	38	96	7	29	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	t0002	2239	52	0	7	35	2	8	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	t0003	2239	36	1	9	18	4	4	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	t0004	2239	16	14	2	0	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	t0005	2239	6	4	0	2	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	1/0	t0006	2217	5	4	0	0	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	t0007	2217	4	4	0	0	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/1	t0008	2239	4	0	3	0	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	t0009	2192	3	2	1	0	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	t0010	2239	3	1	2	0	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	t0011	2217	3	2	0	0	1	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	t0012	2239	2	0	0	2	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	t0013	2239	2	2	0	0	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	t0014	2239	2	0	1	0	0	1	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	t0015	2239	2	0	0	0	2	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	t0016	2217	2	2	0	0	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	t0017	2214	1	0	0	0	0	1	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	t0018	2214	1	0	0	0	0	1	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	t0019	2217	1	0	1	0	0	0	copy fasta	DTL	chr1	212030748	212110013