JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DTL_chr1_212030748_212110013	0/0	t0020	2239	1	0	0	1	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	t0021	2217	1	1	0	0	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	t0022	2239	1	0	1	0	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	t0023	2239	1	1	0	0	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	t0024	2217	1	1	0	0	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	t0025	2239	1	0	1	0	0	0	copy fasta	DTL	chr1	212030748	212110013
DTNA_chr18_34705298_34896844	1/1	t0001	4259	51	22	14	3	2	8	copy fasta	DTNA	chr18	34705298	34896844
DTNA_chr18_34705298_34896844	0/0	t0002	4258	12	6	4	0	0	2	copy fasta	DTNA	chr18	34705298	34896844
DTNA_chr18_34705298_34896844	0/0	t0003	4260	9	9	0	0	0	0	copy fasta	DTNA	chr18	34705298	34896844
DTNA_chr18_34705298_34896844	0/0	t0004	4259	6	0	1	1	0	4	copy fasta	DTNA	chr18	34705298	34896844
DTNA_chr18_34705298_34896844	0/0	t0005	4258	5	5	0	0	0	0	copy fasta	DTNA	chr18	34705298	34896844
DTNA_chr18_34705298_34896844	0/0	t0006	4258	3	3	0	0	0	0	copy fasta	DTNA	chr18	34705298	34896844
DTNA_chr18_34705298_34896844	0/0	t0007	4258	3	3	0	0	0	0	copy fasta	DTNA	chr18	34705298	34896844
DTNA_chr18_34705298_34896844	0/0	t0008	4258	3	1	1	0	0	1	copy fasta	DTNA	chr18	34705298	34896844
DTNA_chr18_34705298_34896844	0/0	t0009	4259	3	3	0	0	0	0	copy fasta	DTNA	chr18	34705298	34896844
DTNA_chr18_34705298_34896844	0/0	t0010	4259	3	3	0	0	0	0	copy fasta	DTNA	chr18	34705298	34896844
DTNA_chr18_34705298_34896844	0/0	t0011	4259	2	1	1	0	0	0	copy fasta	DTNA	chr18	34705298	34896844
DTNA_chr18_34705298_34896844	0/0	t0012	4259	2	2	0	0	0	0	copy fasta	DTNA	chr18	34705298	34896844
DTNA_chr18_34705298_34896844	0/0	t0013	4260	1	1	0	0	0	0	copy fasta	DTNA	chr18	34705298	34896844
DTNA_chr18_34705298_34896844	0/0	t0014	4258	1	1	0	0	0	0	copy fasta	DTNA	chr18	34705298	34896844
DTNA_chr18_34705298_34896844	0/0	t0015	4260	1	1	0	0	0	0	copy fasta	DTNA	chr18	34705298	34896844
DTNA_chr18_34705298_34896844	0/0	t0016	4258	1	0	1	0	0	0	copy fasta	DTNA	chr18	34705298	34896844
DTNA_chr18_34705298_34896844	0/0	t0017	4258	1	1	0	0	0	0	copy fasta	DTNA	chr18	34705298	34896844
DTNA_chr18_34705298_34896844	0/0	t0018	4260	1	1	0	0	0	0	copy fasta	DTNA	chr18	34705298	34896844
DTNA_chr18_34705298_34896844	0/0	t0019	4259	1	1	0	0	0	0	copy fasta	DTNA	chr18	34705298	34896844
DTNA_chr18_34705298_34896844	0/0	t0020	4259	1	1	0	0	0	0	copy fasta	DTNA	chr18	34705298	34896844
DTNA_chr18_34705298_34896844	0/0	t0021	4259	1	0	0	0	0	1	copy fasta	DTNA	chr18	34705298	34896844
DTNA_chr18_34705298_34896844	0/0	t0022	4260	1	1	0	0	0	0	copy fasta	DTNA	chr18	34705298	34896844
DTNBP1_chr6_15517807_15668028	1/1	t0001	328	251	59	50	108	8	24	copy fasta	DTNBP1	chr6	15517807	15668028
DTNBP1_chr6_15517807_15668028	0/0	t0002	328	33	13	5	5	3	7	copy fasta	DTNBP1	chr6	15517807	15668028
DTNBP1_chr6_15517807_15668028	0/0	t0003	328	21	9	7	0	2	3	copy fasta	DTNBP1	chr6	15517807	15668028
DTNBP1_chr6_15517807_15668028	0/0	t0004	328	5	3	2	0	0	0	copy fasta	DTNBP1	chr6	15517807	15668028
DTNBP1_chr6_15517807_15668028	0/0	t0005	328	2	2	0	0	0	0	copy fasta	DTNBP1	chr6	15517807	15668028
DTNBP1_chr6_15517807_15668028	0/0	t0006	328	1	0	0	1	0	0	copy fasta	DTNBP1	chr6	15517807	15668028
DTNBP1_chr6_15517807_15668028	0/0	t0007	328	1	0	0	0	1	0	copy fasta	DTNBP1	chr6	15517807	15668028
DTNB_chr2_25372243_25678577	1/1	t0001	533	166	56	38	44	8	18	copy fasta	DTNB	chr2	25372243	25678577
DTNB_chr2_25372243_25678577	0/0	t0002	533	1	1	0	0	0	0	copy fasta	DTNB	chr2	25372243	25678577
DTNB_chr2_25372243_25678577	0/0	t0003	533	1	1	0	0	0	0	copy fasta	DTNB	chr2	25372243	25678577
DTWD1_chr15_49616048_49661232	1/0	t0001	12785	85	20	19	31	2	12	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0002	12785	34	1	2	29	0	2	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0003	12785	32	2	4	20	4	2	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0004	12785	31	1	5	20	0	5	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0005	12785	17	1	8	1	2	5	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0006	12849	8	8	0	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/1	t0007	12785	7	1	2	1	2	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0008	12785	7	0	0	7	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0009	12785	7	0	1	3	0	3	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0010	12784	6	0	0	6	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0011	12785	6	5	1	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0012	12785	5	0	3	0	1	1	copy fasta	DTWD1	chr15	49616048	49661232