JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DTWD1_chr15_49616048_49661232	0/0	t0013	12852	5	4	1	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0014	12852	5	5	0	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0015	12787	5	0	0	5	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0016	12786	4	0	1	3	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0017	12785	4	0	0	4	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0018	12785	4	0	1	0	2	1	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0019	12782	4	0	0	0	0	4	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0020	12852	3	0	0	0	3	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0021	12785	3	0	0	3	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0022	12785	2	0	0	0	0	2	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0023	12785	2	2	0	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0024	12785	2	2	0	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0025	12782	2	0	1	0	0	1	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0026	12853	2	0	0	0	0	2	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0027	12785	1	1	0	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0028	12785	1	0	1	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0029	12785	1	0	0	0	0	1	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0030	12785	1	0	0	0	0	1	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0031	12785	1	0	0	1	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0032	12852	1	1	0	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0033	12785	1	0	1	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0034	12849	1	1	0	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0035	12786	1	0	0	1	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0036	12785	1	0	0	1	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0037	12785	1	0	0	0	0	1	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0038	12785	1	0	0	1	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0039	12785	1	0	0	0	1	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0040	12785	1	0	0	1	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0041	12785	1	0	0	1	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0042	12785	1	0	0	1	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0043	12785	1	0	0	1	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0044	12785	1	0	0	0	0	1	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0045	12785	1	1	0	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0046	12797	1	0	0	1	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0047	12785	1	0	0	0	0	1	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0048	12785	1	0	0	1	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0049	12787	1	0	0	1	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0050	12852	1	1	0	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0051	12852	1	1	0	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0052	12852	1	1	0	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0053	12852	1	1	0	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0054	12852	1	1	0	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0055	12785	1	0	1	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0056	12785	1	0	0	1	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0057	12785	1	0	0	0	0	1	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0058	12785	1	0	0	0	0	1	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0059	12785	1	1	0	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0060	12785	1	1	0	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0061	12785	1	1	0	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	t0062	12785	1	0	1	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232